Cluster: A43.bin_3_CGC53
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_04405
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_1851 | 2466683 | 2469406 | - | GH63 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1852 | 2469464 | 2469583 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | A43_contig_103 | A43_contig_103_1853 | 2469819 | 2471405 | + | S1_8 |
| CAZyme | A43_contig_103 | A43_contig_103_1854 | 2472028 | 2473914 | + | GH43_3 |
| pfam | A43_contig_103 | A43_contig_103_1855 | 2473994 | 2475391 | + | TIG |
| TC | A43_contig_103 | A43_contig_103_1856 | 2475412 | 2478567 | + | 1.B.14.6.1 |
| pfam | A43_contig_103 | A43_contig_103_1857 | 2478581 | 2480677 | + | SusD_RagB | SusD-like_3 |
| pfam | A43_contig_103 | A43_contig_103_1858 | 2480697 | 2481695 | + | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| CAZyme | A43_contig_103 | A43_contig_103_1859 | 2481863 | 2483182 | + | GH43_31 |
| CAZyme | A43_contig_103 | A43_contig_103_1860 | 2483203 | 2484750 | + | GH76 |
| CAZyme | A43_contig_103 | A43_contig_103_1861 | 2484768 | 2486411 | + | GH105 |
| pfam | A43_contig_103 | A43_contig_103_1862 | 2486570 | 2486959 | + | DUF4372 |
| CAZyme | A43_contig_103 | A43_contig_103_1863 | 2486994 | 2489705 | + | GH2 |
| CAZyme | A43_contig_103 | A43_contig_103_1864 | 2489810 | 2490955 | + | GH130_3 |
| CAZyme | A43_contig_103 | A43_contig_103_1865 | 2490970 | 2493900 | + | GH2 |
| CAZyme | A43_contig_103 | A43_contig_103_1866 | 2493914 | 2495017 | + | GH105 |
| CAZyme | A43_contig_103 | A43_contig_103_1867 | 2495219 | 2497225 | + | GH182 |
Gene ID: A43_contig_103_1851
Type: CAZyme
Location: 2466683 - 2469406 (-)
Type: CAZyme
Location: 2466683 - 2469406 (-)
Gene ID: A43_contig_103_1852
Type:
Location: 2469464 - 2469583 (+)
Type:
Location: 2469464 - 2469583 (+)
Gene ID: A43_contig_103_1853
Type: sulfatase
Location: 2469819 - 2471405 (+)
Type: sulfatase
Location: 2469819 - 2471405 (+)
Gene ID: A43_contig_103_1854
Type: CAZyme
Location: 2472028 - 2473914 (+)
Type: CAZyme
Location: 2472028 - 2473914 (+)
Gene ID: A43_contig_103_1855
Type: pfam
Location: 2473994 - 2475391 (+)
Type: pfam
Location: 2473994 - 2475391 (+)
Gene ID: A43_contig_103_1856
Type: TC
Location: 2475412 - 2478567 (+)
Type: TC
Location: 2475412 - 2478567 (+)
Gene ID: A43_contig_103_1857
Type: pfam
Location: 2478581 - 2480677 (+)
Type: pfam
Location: 2478581 - 2480677 (+)
Gene ID: A43_contig_103_1858
Type: pfam
Location: 2480697 - 2481695 (+)
Type: pfam
Location: 2480697 - 2481695 (+)
Gene ID: A43_contig_103_1859
Type: CAZyme
Location: 2481863 - 2483182 (+)
Type: CAZyme
Location: 2481863 - 2483182 (+)
Gene ID: A43_contig_103_1860
Type: CAZyme
Location: 2483203 - 2484750 (+)
Type: CAZyme
Location: 2483203 - 2484750 (+)
Gene ID: A43_contig_103_1861
Type: CAZyme
Location: 2484768 - 2486411 (+)
Type: CAZyme
Location: 2484768 - 2486411 (+)
Gene ID: A43_contig_103_1862
Type: pfam
Location: 2486570 - 2486959 (+)
Type: pfam
Location: 2486570 - 2486959 (+)
Gene ID: A43_contig_103_1863
Type: CAZyme
Location: 2486994 - 2489705 (+)
Type: CAZyme
Location: 2486994 - 2489705 (+)
Gene ID: A43_contig_103_1864
Type: CAZyme
Location: 2489810 - 2490955 (+)
Type: CAZyme
Location: 2489810 - 2490955 (+)
Gene ID: A43_contig_103_1865
Type: CAZyme
Location: 2490970 - 2493900 (+)
Type: CAZyme
Location: 2490970 - 2493900 (+)
Gene ID: A43_contig_103_1866
Type: CAZyme
Location: 2493914 - 2495017 (+)
Type: CAZyme
Location: 2493914 - 2495017 (+)
Gene ID: A43_contig_103_1867
Type: CAZyme
Location: 2495219 - 2497225 (+)
Type: CAZyme
Location: 2495219 - 2497225 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_1851 | vegan > omnivore | 1.06920 | 0.00290 |
| A43_contig_103_1863 | vegan > omnivore | 1.52227 | 0.00290 |
| A43_contig_103_1866 | vegan > omnivore | 1.37028 | 0.00290 |
| A43_contig_103_1867 | vegan > omnivore | 1.34513 | 0.00290 |