Cluster: A43.bin_3_CGC52
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate: pectin
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_01075
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_1782 | 2369095 | 2371014 | - | CE20 | CE20 |
| pfam | A43_contig_103 | A43_contig_103_1783 | 2371033 | 2371812 | - | DUF5040 |
| CAZyme | A43_contig_103 | A43_contig_103_1784 | 2371815 | 2374547 | - | CBM67 | GH78 |
| TC | A43_contig_103 | A43_contig_103_1785 | 2374507 | 2375901 | - | 2.A.2.3.6 |
| CAZyme | A43_contig_103 | A43_contig_103_1786 | 2375912 | 2377081 | - | GH130_1 |
| CAZyme | A43_contig_103 | A43_contig_103_1787 | 2377108 | 2378469 | - | GH140 |
| CAZyme | A43_contig_103 | A43_contig_103_1788 | 2378474 | 2379514 | - | GH5_5 |
| CAZyme | A43_contig_103 | A43_contig_103_1789 | 2379525 | 2382095 | - | GH2 |
| CAZyme | A43_contig_103 | A43_contig_103_1790 | 2382114 | 2383199 | - | GH5_5 |
| pfam | A43_contig_103 | A43_contig_103_1791 | 2383259 | 2384431 | - | TIG | SGBP_B_XBD |
| pfam | A43_contig_103 | A43_contig_103_1792 | 2384461 | 2386224 | - | SusD_RagB | SusD-like_3 |
| TC | A43_contig_103 | A43_contig_103_1793 | 2386237 | 2389488 | - | 1.B.14.6.1 |
| CAZyme | A43_contig_103 | A43_contig_103_1794 | 2389608 | 2390585 | - | GH5_2 |
| CAZyme | A43_contig_103 | A43_contig_103_1795 | 2390897 | 2392894 | + | GH172 |
| TC | A43_contig_103 | A43_contig_103_1796 | 2392891 | 2393880 | - | 2.A.19.5.2 |
| TC | A43_contig_103 | A43_contig_103_1797 | 2394008 | 2395858 | + | 1.A.23.1.4 |
Gene ID: A43_contig_103_1782
Type: CAZyme
Location: 2369095 - 2371014 (-)
Type: CAZyme
Location: 2369095 - 2371014 (-)
Gene ID: A43_contig_103_1783
Type: pfam
Location: 2371033 - 2371812 (-)
Type: pfam
Location: 2371033 - 2371812 (-)
Gene ID: A43_contig_103_1784
Type: CAZyme
Location: 2371815 - 2374547 (-)
Type: CAZyme
Location: 2371815 - 2374547 (-)
Gene ID: A43_contig_103_1785
Type: TC
Location: 2374507 - 2375901 (-)
Type: TC
Location: 2374507 - 2375901 (-)
Gene ID: A43_contig_103_1786
Type: CAZyme
Location: 2375912 - 2377081 (-)
Type: CAZyme
Location: 2375912 - 2377081 (-)
Gene ID: A43_contig_103_1787
Type: CAZyme
Location: 2377108 - 2378469 (-)
Type: CAZyme
Location: 2377108 - 2378469 (-)
Gene ID: A43_contig_103_1788
Type: CAZyme
Location: 2378474 - 2379514 (-)
Type: CAZyme
Location: 2378474 - 2379514 (-)
Gene ID: A43_contig_103_1789
Type: CAZyme
Location: 2379525 - 2382095 (-)
Type: CAZyme
Location: 2379525 - 2382095 (-)
Gene ID: A43_contig_103_1790
Type: CAZyme
Location: 2382114 - 2383199 (-)
Type: CAZyme
Location: 2382114 - 2383199 (-)
Gene ID: A43_contig_103_1791
Type: pfam
Location: 2383259 - 2384431 (-)
Type: pfam
Location: 2383259 - 2384431 (-)
Gene ID: A43_contig_103_1792
Type: pfam
Location: 2384461 - 2386224 (-)
Type: pfam
Location: 2384461 - 2386224 (-)
Gene ID: A43_contig_103_1793
Type: TC
Location: 2386237 - 2389488 (-)
Type: TC
Location: 2386237 - 2389488 (-)
Gene ID: A43_contig_103_1794
Type: CAZyme
Location: 2389608 - 2390585 (-)
Type: CAZyme
Location: 2389608 - 2390585 (-)
Gene ID: A43_contig_103_1795
Type: CAZyme
Location: 2390897 - 2392894 (+)
Type: CAZyme
Location: 2390897 - 2392894 (+)
Gene ID: A43_contig_103_1796
Type: TC
Location: 2392891 - 2393880 (-)
Type: TC
Location: 2392891 - 2393880 (-)
Gene ID: A43_contig_103_1797
Type: TC
Location: 2394008 - 2395858 (+)
Type: TC
Location: 2394008 - 2395858 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_1782 | vegan > omnivore | 1.64460 | 0.00290 |
| A43_contig_103_1783 | vegan > omnivore | 2.24411 | 0.00290 |
| A43_contig_103_1784 | vegan > omnivore | 1.47517 | 0.00290 |
| A43_contig_103_1785 | vegan > omnivore | 1.24872 | 0.00290 |
| A43_contig_103_1786 | vegan > omnivore | 1.40128 | 0.00290 |
| A43_contig_103_1787 | vegan > omnivore | 1.67880 | 0.00290 |
| A43_contig_103_1788 | vegan > omnivore | 1.28084 | 0.00290 |
| A43_contig_103_1789 | vegan > omnivore | 1.31779 | 0.00290 |
| A43_contig_103_1790 | vegan > omnivore | 1.53185 | 0.00290 |
| A43_contig_103_1791 | vegan > omnivore | 1.30732 | 0.00290 |
| A43_contig_103_1792 | vegan > omnivore | 1.63201 | 0.00290 |
| A43_contig_103_1793 | vegan > omnivore | 1.46297 | 0.00290 |
| A43_contig_103_1794 | vegan > omnivore | 1.93800 | 0.00290 |
| A43_contig_103_1795 | vegan > omnivore | 1.23948 | 0.00290 |