Cluster: A43.bin_3_CGC50
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00440
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_1724 | 2284827 | 2287121 | - | GH3 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1725 | 2287234 | 2288496 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_103 | A43_contig_103_1726 | 2288517 | 2290193 | - | 8.A.46.2.1 |
| TC | A43_contig_103 | A43_contig_103_1727 | 2290205 | 2293393 | - | 1.B.14.6.2 |
| CAZyme | A43_contig_103 | A43_contig_103_1728 | 2293414 | 2294229 | - | GH16_3 |
| TF | A43_contig_103 | A43_contig_103_1729 | 2295026 | 2298997 | - | HTH_AraC |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1730 | 2299094 | 2301949 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_103 | A43_contig_103_1731 | 2302198 | 2305227 | + | 1.B.14.6.1 |
| TC | A43_contig_103 | A43_contig_103_1732 | 2305273 | 2306739 | + | 8.A.46.1.6 |
| CAZyme | A43_contig_103 | A43_contig_103_1733 | 2306763 | 2308871 | + | CBM32 | GH43_28 |
| CAZyme | A43_contig_103 | A43_contig_103_1734 | 2308900 | 2310264 | + | GH144 |
| CAZyme | A43_contig_103 | A43_contig_103_1735 | 2310302 | 2312587 | + | GH3 |
| CAZyme | A43_contig_103 | A43_contig_103_1736 | 2312815 | 2315217 | - | GH3 |
Gene ID: A43_contig_103_1724
Type: CAZyme
Location: 2284827 - 2287121 (-)
Type: CAZyme
Location: 2284827 - 2287121 (-)
Gene ID: A43_contig_103_1725
Type:
Location: 2287234 - 2288496 (-)
Type:
Location: 2287234 - 2288496 (-)
Gene ID: A43_contig_103_1726
Type: TC
Location: 2288517 - 2290193 (-)
Type: TC
Location: 2288517 - 2290193 (-)
Gene ID: A43_contig_103_1727
Type: TC
Location: 2290205 - 2293393 (-)
Type: TC
Location: 2290205 - 2293393 (-)
Gene ID: A43_contig_103_1728
Type: CAZyme
Location: 2293414 - 2294229 (-)
Type: CAZyme
Location: 2293414 - 2294229 (-)
Gene ID: A43_contig_103_1729
Type: TF
Location: 2295026 - 2298997 (-)
Type: TF
Location: 2295026 - 2298997 (-)
Gene ID: A43_contig_103_1730
Type:
Location: 2299094 - 2301949 (-)
Type:
Location: 2299094 - 2301949 (-)
Gene ID: A43_contig_103_1731
Type: TC
Location: 2302198 - 2305227 (+)
Type: TC
Location: 2302198 - 2305227 (+)
Gene ID: A43_contig_103_1732
Type: TC
Location: 2305273 - 2306739 (+)
Type: TC
Location: 2305273 - 2306739 (+)
Gene ID: A43_contig_103_1733
Type: CAZyme
Location: 2306763 - 2308871 (+)
Type: CAZyme
Location: 2306763 - 2308871 (+)
Gene ID: A43_contig_103_1734
Type: CAZyme
Location: 2308900 - 2310264 (+)
Type: CAZyme
Location: 2308900 - 2310264 (+)
Gene ID: A43_contig_103_1735
Type: CAZyme
Location: 2310302 - 2312587 (+)
Type: CAZyme
Location: 2310302 - 2312587 (+)
Gene ID: A43_contig_103_1736
Type: CAZyme
Location: 2312815 - 2315217 (-)
Type: CAZyme
Location: 2312815 - 2315217 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_1724 | vegan > omnivore | 1.05528 | 0.00290 |