dbCAN HGM

Cluster: A43.bin_3_CGC49

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 16
CAZyme Count: 5
Substrate: alginate
Genome ID: A43.bin_3
CGC Family ID: CGCFAM_00331
Continent: Asia
Source Study: Jin et al., 2023 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	A43_contig_103	A43_contig_103_1701	2250155	2253313	+	1.B.14.6.1
TC	A43_contig_103	A43_contig_103_1702	2253356	2254819	+	8.A.46.1.5
pfam	A43_contig_103	A43_contig_103_1703	2254856	2256370	+	SusE \| SusF_SusE \| SusF_SusE
CAZyme	A43_contig_103	A43_contig_103_1704	2256385	2258166	+	GH66
CAZyme	A43_contig_103	A43_contig_103_1705	2258243	2260747	+	GH31
TF	A43_contig_103	A43_contig_103_1706	2261644	2262363	-	GntR
NULL(UNKNOWN)	A43_contig_103	A43_contig_103_1707	2262386	2262502	+	NULL(UNKNOWN) [View Structural Homologs]
TC	A43_contig_103	A43_contig_103_1708	2262605	2265787	+	1.B.14.6.1
TC	A43_contig_103	A43_contig_103_1709	2265800	2267320	+	8.A.46.1.5
pfam	A43_contig_103	A43_contig_103_1710	2267341	2269023	+	TIG
CAZyme	A43_contig_103	A43_contig_103_1711	2269027	2271291	+	PL6 \| PL6_1
CAZyme	A43_contig_103	A43_contig_103_1712	2271338	2273545	+	PL17 \| PL17_2
pfam	A43_contig_103	A43_contig_103_1713	2273782	2274126	+	Cupin_2 \| Cupin_7
TC	A43_contig_103	A43_contig_103_1714	2274155	2275597	+	2.A.1.14.25
pfam	A43_contig_103	A43_contig_103_1715	2275622	2276374	+	adh_short \| KR \| adh_short_C2 \| SDR
CAZyme	A43_contig_103	A43_contig_103_1716	2276495	2277697	+	PL38

Gene ID: A43_contig_103_1701
Type: TC
Location: 2250155 - 2253313 (+)

Gene ID: A43_contig_103_1702
Type: TC
Location: 2253356 - 2254819 (+)

Gene ID: A43_contig_103_1703
Type: pfam
Location: 2254856 - 2256370 (+)

Gene ID: A43_contig_103_1704
Type: CAZyme
Location: 2256385 - 2258166 (+)

Gene ID: A43_contig_103_1705
Type: CAZyme
Location: 2258243 - 2260747 (+)

Gene ID: A43_contig_103_1706
Type: TF
Location: 2261644 - 2262363 (-)

Gene ID: A43_contig_103_1707
Type:
Location: 2262386 - 2262502 (+)

Gene ID: A43_contig_103_1708
Type: TC
Location: 2262605 - 2265787 (+)

Gene ID: A43_contig_103_1709
Type: TC
Location: 2265800 - 2267320 (+)

Gene ID: A43_contig_103_1710
Type: pfam
Location: 2267341 - 2269023 (+)

Gene ID: A43_contig_103_1711
Type: CAZyme
Location: 2269027 - 2271291 (+)

Gene ID: A43_contig_103_1712
Type: CAZyme
Location: 2271338 - 2273545 (+)

Gene ID: A43_contig_103_1713
Type: pfam
Location: 2273782 - 2274126 (+)

Gene ID: A43_contig_103_1714
Type: TC
Location: 2274155 - 2275597 (+)

Gene ID: A43_contig_103_1715
Type: pfam
Location: 2275622 - 2276374 (+)

Gene ID: A43_contig_103_1716
Type: CAZyme
Location: 2276495 - 2277697 (+)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacteroidota

→

Class

Bacteroidia

→

Order

Bacteroidales

→

Family

Bacteroidaceae

→

Genus

Bacteroides

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Species

Bacteroides xylanisolvens

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
A43_contig_103_1706	vegan > omnivore	1.28637	0.00290
A43_contig_103_1707	vegan > omnivore	3.43643	0.00290
A43_contig_103_1707	vegetarian > omnivore	1.85551	0.01178
A43_contig_103_1709	vegetarian > omnivore	1.26676	0.03791
A43_contig_103_1714	vegetarian > omnivore	1.35992	0.03380

Gene ID	Condition Pair	log2FC	FDR P-value
A43_contig_103_1706	UC > CD	1.58946	0.01970
A43_contig_103_1707	UC > CD	1.65130	0.01970
A43_contig_103_1708	UC > CD	1.22785	0.01970
A43_contig_103_1709	UC > CD	1.08924	0.01970
A43_contig_103_1710	UC > CD	1.00904	0.01970
A43_contig_103_1711	UC > CD	1.21573	0.01970
A43_contig_103_1712	UC > CD	1.09621	0.01970
A43_contig_103_1713	UC > CD	1.53499	0.01970
A43_contig_103_1714	UC > CD	1.22582	0.01970
A43_contig_103_1715	UC > CD	1.12619	0.01970

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