Cluster: A43.bin_3_CGC44
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_04164
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_103 | A43_contig_103_1532 | 1997284 | 1998639 | + | 9.B.145.1.2 |
| peptidase | A43_contig_103 | A43_contig_103_1533 | 1998659 | 2000800 | + | S46.001 |
| CAZyme | A43_contig_103 | A43_contig_103_1534 | 2000958 | 2002427 | - | GH125 |
| CAZyme | A43_contig_103 | A43_contig_103_1535 | 2002464 | 2003642 | - | GH76 |
| CAZyme | A43_contig_103 | A43_contig_103_1536 | 2003651 | 2004790 | - | GH76 |
| pfam | A43_contig_103 | A43_contig_103_1537 | 2004799 | 2006613 | - | SusE |
| TC | A43_contig_103 | A43_contig_103_1538 | 2006638 | 2008257 | - | 8.A.46.1.3 |
| TC | A43_contig_103 | A43_contig_103_1539 | 2008270 | 2011407 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1540 | 2011542 | 2011742 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A43_contig_103 | A43_contig_103_1541 | 2011762 | 2015832 | + | HTH_AraC |
| TC | A43_contig_103 | A43_contig_103_1542 | 2015905 | 2017836 | - | 3.A.18.1.1 |
Gene ID: A43_contig_103_1532
Type: TC
Location: 1997284 - 1998639 (+)
Type: TC
Location: 1997284 - 1998639 (+)
Gene ID: A43_contig_103_1533
Type: peptidase
Location: 1998659 - 2000800 (+)
Type: peptidase
Location: 1998659 - 2000800 (+)
Gene ID: A43_contig_103_1534
Type: CAZyme
Location: 2000958 - 2002427 (-)
Type: CAZyme
Location: 2000958 - 2002427 (-)
Gene ID: A43_contig_103_1535
Type: CAZyme
Location: 2002464 - 2003642 (-)
Type: CAZyme
Location: 2002464 - 2003642 (-)
Gene ID: A43_contig_103_1536
Type: CAZyme
Location: 2003651 - 2004790 (-)
Type: CAZyme
Location: 2003651 - 2004790 (-)
Gene ID: A43_contig_103_1537
Type: pfam
Location: 2004799 - 2006613 (-)
Type: pfam
Location: 2004799 - 2006613 (-)
Gene ID: A43_contig_103_1538
Type: TC
Location: 2006638 - 2008257 (-)
Type: TC
Location: 2006638 - 2008257 (-)
Gene ID: A43_contig_103_1539
Type: TC
Location: 2008270 - 2011407 (-)
Type: TC
Location: 2008270 - 2011407 (-)
Gene ID: A43_contig_103_1540
Type:
Location: 2011542 - 2011742 (+)
Type:
Location: 2011542 - 2011742 (+)
Gene ID: A43_contig_103_1541
Type: TF
Location: 2011762 - 2015832 (+)
Type: TF
Location: 2011762 - 2015832 (+)
Gene ID: A43_contig_103_1542
Type: TC
Location: 2015905 - 2017836 (-)
Type: TC
Location: 2015905 - 2017836 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.