Cluster: A43.bin_3_CGC36
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_01917
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_1253 | 1625109 | 1627223 | - | GH127 |
| sulfatase | A43_contig_103 | A43_contig_103_1254 | 1627305 | 1628435 | - | S1_22 |
| CAZyme | A43_contig_103 | A43_contig_103_1255 | 1628579 | 1630042 | - | GH125 |
| CAZyme | A43_contig_103 | A43_contig_103_1256 | 1630045 | 1632336 | - | GH92 |
| sulfatase | A43_contig_103 | A43_contig_103_1257 | 1632349 | 1634826 | - | S1_4 |
| CAZyme | A43_contig_103 | A43_contig_103_1258 | 1634882 | 1636141 | - | GH76 |
| pfam | A43_contig_103 | A43_contig_103_1259 | 1636374 | 1637840 | - | DUF4972 |
| pfam | A43_contig_103 | A43_contig_103_1260 | 1637863 | 1639005 | - | Laminin_G_3 | DUF4972 |
| CAZyme | A43_contig_103 | A43_contig_103_1261 | 1639031 | 1640350 | - | GH76 |
| pfam | A43_contig_103 | A43_contig_103_1262 | 1640377 | 1642296 | - | SusD_RagB | SusD-like_3 |
| TC | A43_contig_103 | A43_contig_103_1263 | 1642308 | 1645739 | - | 1.B.14.6.1 |
| STP | A43_contig_103 | A43_contig_103_1264 | 1645898 | 1647100 | - | FecR |
| STP | A43_contig_103 | A43_contig_103_1265 | 1647214 | 1647786 | - | Sigma70_r4_2 |
| CAZyme | A43_contig_103 | A43_contig_103_1266 | 1647892 | 1648881 | - | GH43_34 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1267 | 1649130 | 1649276 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A43_contig_103 | A43_contig_103_1268 | 1649294 | 1651108 | + | GH2 |
Gene ID: A43_contig_103_1253
Type: CAZyme
Location: 1625109 - 1627223 (-)
Type: CAZyme
Location: 1625109 - 1627223 (-)
Gene ID: A43_contig_103_1254
Type: sulfatase
Location: 1627305 - 1628435 (-)
Type: sulfatase
Location: 1627305 - 1628435 (-)
Gene ID: A43_contig_103_1255
Type: CAZyme
Location: 1628579 - 1630042 (-)
Type: CAZyme
Location: 1628579 - 1630042 (-)
Gene ID: A43_contig_103_1256
Type: CAZyme
Location: 1630045 - 1632336 (-)
Type: CAZyme
Location: 1630045 - 1632336 (-)
Gene ID: A43_contig_103_1257
Type: sulfatase
Location: 1632349 - 1634826 (-)
Type: sulfatase
Location: 1632349 - 1634826 (-)
Gene ID: A43_contig_103_1258
Type: CAZyme
Location: 1634882 - 1636141 (-)
Type: CAZyme
Location: 1634882 - 1636141 (-)
Gene ID: A43_contig_103_1259
Type: pfam
Location: 1636374 - 1637840 (-)
Type: pfam
Location: 1636374 - 1637840 (-)
Gene ID: A43_contig_103_1260
Type: pfam
Location: 1637863 - 1639005 (-)
Type: pfam
Location: 1637863 - 1639005 (-)
Gene ID: A43_contig_103_1261
Type: CAZyme
Location: 1639031 - 1640350 (-)
Type: CAZyme
Location: 1639031 - 1640350 (-)
Gene ID: A43_contig_103_1262
Type: pfam
Location: 1640377 - 1642296 (-)
Type: pfam
Location: 1640377 - 1642296 (-)
Gene ID: A43_contig_103_1263
Type: TC
Location: 1642308 - 1645739 (-)
Type: TC
Location: 1642308 - 1645739 (-)
Gene ID: A43_contig_103_1264
Type: STP
Location: 1645898 - 1647100 (-)
Type: STP
Location: 1645898 - 1647100 (-)
Gene ID: A43_contig_103_1265
Type: STP
Location: 1647214 - 1647786 (-)
Type: STP
Location: 1647214 - 1647786 (-)
Gene ID: A43_contig_103_1266
Type: CAZyme
Location: 1647892 - 1648881 (-)
Type: CAZyme
Location: 1647892 - 1648881 (-)
Gene ID: A43_contig_103_1267
Type:
Location: 1649130 - 1649276 (+)
Type:
Location: 1649130 - 1649276 (+)
Gene ID: A43_contig_103_1268
Type: CAZyme
Location: 1649294 - 1651108 (+)
Type: CAZyme
Location: 1649294 - 1651108 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_1265 | vegan > omnivore | 1.26766 | 0.00290 |