Cluster: A43.bin_3_CGC25
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_01310
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_103 | A43_contig_103_838 | 1058402 | 1062727 | + | 2.A.6.1.2 |
| pfam | A43_contig_103 | A43_contig_103_839 | 1062790 | 1063683 | + | HlyD_3 | HlyD_D23 |
| TC | A43_contig_103 | A43_contig_103_840 | 1063754 | 1064821 | + | 9.B.33.1.1 |
| TF | A43_contig_103 | A43_contig_103_841 | 1064827 | 1065621 | + | LytTR |
| CAZyme | A43_contig_103 | A43_contig_103_842 | 1065985 | 1067931 | - | GH97 |
| CAZyme | A43_contig_103 | A43_contig_103_843 | 1068035 | 1070380 | - | GH92 |
| pfam | A43_contig_103 | A43_contig_103_844 | 1070403 | 1071197 | - | BSP |
| CAZyme | A43_contig_103 | A43_contig_103_845 | 1071211 | 1073553 | - | GH92 |
| CAZyme | A43_contig_103 | A43_contig_103_846 | 1073560 | 1075845 | - | GH92 |
| TC | A43_contig_103 | A43_contig_103_847 | 1076153 | 1077778 | - | 8.A.46.3.2 |
| TC | A43_contig_103 | A43_contig_103_848 | 1077806 | 1080943 | - | 1.B.14.6.1 |
Gene ID: A43_contig_103_838
Type: TC
Location: 1058402 - 1062727 (+)
Type: TC
Location: 1058402 - 1062727 (+)
Gene ID: A43_contig_103_839
Type: pfam
Location: 1062790 - 1063683 (+)
Type: pfam
Location: 1062790 - 1063683 (+)
Gene ID: A43_contig_103_840
Type: TC
Location: 1063754 - 1064821 (+)
Type: TC
Location: 1063754 - 1064821 (+)
Gene ID: A43_contig_103_841
Type: TF
Location: 1064827 - 1065621 (+)
Type: TF
Location: 1064827 - 1065621 (+)
Gene ID: A43_contig_103_842
Type: CAZyme
Location: 1065985 - 1067931 (-)
Type: CAZyme
Location: 1065985 - 1067931 (-)
Gene ID: A43_contig_103_843
Type: CAZyme
Location: 1068035 - 1070380 (-)
Type: CAZyme
Location: 1068035 - 1070380 (-)
Gene ID: A43_contig_103_844
Type: pfam
Location: 1070403 - 1071197 (-)
Type: pfam
Location: 1070403 - 1071197 (-)
Gene ID: A43_contig_103_845
Type: CAZyme
Location: 1071211 - 1073553 (-)
Type: CAZyme
Location: 1071211 - 1073553 (-)
Gene ID: A43_contig_103_846
Type: CAZyme
Location: 1073560 - 1075845 (-)
Type: CAZyme
Location: 1073560 - 1075845 (-)
Gene ID: A43_contig_103_847
Type: TC
Location: 1076153 - 1077778 (-)
Type: TC
Location: 1076153 - 1077778 (-)
Gene ID: A43_contig_103_848
Type: TC
Location: 1077806 - 1080943 (-)
Type: TC
Location: 1077806 - 1080943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_839 | vegan > omnivore | 1.37342 | 0.00290 |
| A43_contig_103_840 | vegan > omnivore | 1.21821 | 0.00290 |
| A43_contig_103_840 | vegetarian > omnivore | 1.12798 | 0.02617 |
| A43_contig_103_841 | vegan > omnivore | 1.26379 | 0.00290 |
| A43_contig_103_841 | vegetarian > omnivore | 1.30436 | 0.00763 |