Cluster: A43.bin_3_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_813 | 1022700 | 1024937 | + | GH92 |
| TF | A43_contig_103 | A43_contig_103_814 | 1024965 | 1025522 | + | GerE |
| STP | A43_contig_103 | A43_contig_103_815 | 1025539 | 1026564 | + | FecR |
| CAZyme | A43_contig_103 | A43_contig_103_816 | 1026609 | 1028915 | + | GH92 |
| CAZyme | A43_contig_103 | A43_contig_103_817 | 1029020 | 1031290 | + | GH92 |
| pfam | A43_contig_103 | A43_contig_103_818 | 1032134 | 1032790 | + | Fic |
| pfam | A43_contig_103 | A43_contig_103_819 | 1032926 | 1034269 | - | F5_F8_type_C | DUF4989 | F5_F8_type_C_2 |
| CAZyme | A43_contig_103 | A43_contig_103_820 | 1034300 | 1035724 | - | GH18 |
| pfam | A43_contig_103 | A43_contig_103_821 | 1035764 | 1036918 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | A43_contig_103 | A43_contig_103_822 | 1036927 | 1038003 | - | GH18_BT1044-like |
| TC | A43_contig_103 | A43_contig_103_823 | 1038028 | 1039641 | - | 8.A.46.2.2 |
| TC | A43_contig_103 | A43_contig_103_824 | 1039658 | 1043065 | - | 1.B.14.6.13 |
Gene ID: A43_contig_103_813
Type: CAZyme
Location: 1022700 - 1024937 (+)
Type: CAZyme
Location: 1022700 - 1024937 (+)
Gene ID: A43_contig_103_814
Type: TF
Location: 1024965 - 1025522 (+)
Type: TF
Location: 1024965 - 1025522 (+)
Gene ID: A43_contig_103_815
Type: STP
Location: 1025539 - 1026564 (+)
Type: STP
Location: 1025539 - 1026564 (+)
Gene ID: A43_contig_103_816
Type: CAZyme
Location: 1026609 - 1028915 (+)
Type: CAZyme
Location: 1026609 - 1028915 (+)
Gene ID: A43_contig_103_817
Type: CAZyme
Location: 1029020 - 1031290 (+)
Type: CAZyme
Location: 1029020 - 1031290 (+)
Gene ID: A43_contig_103_818
Type: pfam
Location: 1032134 - 1032790 (+)
Type: pfam
Location: 1032134 - 1032790 (+)
Gene ID: A43_contig_103_819
Type: pfam
Location: 1032926 - 1034269 (-)
Type: pfam
Location: 1032926 - 1034269 (-)
Gene ID: A43_contig_103_820
Type: CAZyme
Location: 1034300 - 1035724 (-)
Type: CAZyme
Location: 1034300 - 1035724 (-)
Gene ID: A43_contig_103_821
Type: pfam
Location: 1035764 - 1036918 (-)
Type: pfam
Location: 1035764 - 1036918 (-)
Gene ID: A43_contig_103_822
Type: pfam
Location: 1036927 - 1038003 (-)
Type: pfam
Location: 1036927 - 1038003 (-)
Gene ID: A43_contig_103_823
Type: TC
Location: 1038028 - 1039641 (-)
Type: TC
Location: 1038028 - 1039641 (-)
Gene ID: A43_contig_103_824
Type: TC
Location: 1039658 - 1043065 (-)
Type: TC
Location: 1039658 - 1043065 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.