Cluster: A43.bin_3_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00536
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_102 | 107949 | 109034 | - | GH18 |
| TC | A43_contig_103 | A43_contig_103_103 | 109059 | 110672 | - | 8.A.46.2.2 |
| TC | A43_contig_103 | A43_contig_103_104 | 110696 | 113989 | - | 1.B.14.6.13 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_105 | 114090 | 114233 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | A43_contig_103 | A43_contig_103_106 | 114245 | 115165 | - | FecR |
| CAZyme | A43_contig_103 | A43_contig_103_107 | 115260 | 117251 | - | GH33 |
Gene ID: A43_contig_103_102
Type: CAZyme
Location: 107949 - 109034 (-)
Type: CAZyme
Location: 107949 - 109034 (-)
Gene ID: A43_contig_103_103
Type: TC
Location: 109059 - 110672 (-)
Type: TC
Location: 109059 - 110672 (-)
Gene ID: A43_contig_103_104
Type: TC
Location: 110696 - 113989 (-)
Type: TC
Location: 110696 - 113989 (-)
Gene ID: A43_contig_103_105
Type:
Location: 114090 - 114233 (+)
Type:
Location: 114090 - 114233 (+)
Gene ID: A43_contig_103_106
Type: STP
Location: 114245 - 115165 (-)
Type: STP
Location: 114245 - 115165 (-)
Gene ID: A43_contig_103_107
Type: CAZyme
Location: 115260 - 117251 (-)
Type: CAZyme
Location: 115260 - 117251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_102 | vegan > omnivore | 1.70018 | 0.00290 |
| A43_contig_103_102 | vegetarian > omnivore | 1.00263 | 0.03791 |
| A43_contig_103_103 | vegan > omnivore | 1.85544 | 0.00290 |
| A43_contig_103_103 | vegetarian > omnivore | 1.51732 | 0.02224 |
| A43_contig_103_104 | vegan > omnivore | 1.56215 | 0.00290 |
| A43_contig_103_104 | vegetarian > omnivore | 1.30849 | 0.03380 |
| A43_contig_103_105 | vegan > omnivore | 1.01603 | 0.00290 |
| A43_contig_103_106 | vegan > omnivore | 1.30136 | 0.00290 |
| A43_contig_103_106 | vegetarian > omnivore | 1.33226 | 0.02617 |
| A43_contig_103_107 | vegan > omnivore | 1.38336 | 0.00290 |
| A43_contig_103_107 | vegetarian > omnivore | 1.23927 | 0.03380 |