Cluster: A43.bin_3_CGC16
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_00927
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_103 | A43_contig_103_657 | 796579 | 799710 | + | 1.B.14.6.1 |
| pfam | A43_contig_103 | A43_contig_103_658 | 799735 | 801816 | + | SusD_RagB | SusD-like_3 |
| pfam | A43_contig_103 | A43_contig_103_659 | 801909 | 802598 | - | Lipase_GDSL_2 | Lipase_GDSL_lke |
| CAZyme | A43_contig_103 | A43_contig_103_660 | 802687 | 804069 | - | GH28 |
| CAZyme | A43_contig_103 | A43_contig_103_661 | 804132 | 806219 | - | GH42 |
| CAZyme | A43_contig_103 | A43_contig_103_662 | 806550 | 808886 | - | GH43_18 | GH43_34 |
| CAZyme | A43_contig_103 | A43_contig_103_663 | 808980 | 812027 | + | GH2 |
| CAZyme | A43_contig_103 | A43_contig_103_664 | 812158 | 813396 | + | CE12 |
| CAZyme | A43_contig_103 | A43_contig_103_665 | 813452 | 814987 | + | GH28 |
| pfam | A43_contig_103 | A43_contig_103_666 | 814938 | 815540 | + | DUF4450 |
| CAZyme | A43_contig_103 | A43_contig_103_667 | 815537 | 816940 | + | GH28 |
| CAZyme | A43_contig_103 | A43_contig_103_668 | 816940 | 819750 | + | GH106 |
Gene ID: A43_contig_103_657
Type: TC
Location: 796579 - 799710 (+)
Type: TC
Location: 796579 - 799710 (+)
Gene ID: A43_contig_103_658
Type: pfam
Location: 799735 - 801816 (+)
Type: pfam
Location: 799735 - 801816 (+)
Gene ID: A43_contig_103_659
Type: pfam
Location: 801909 - 802598 (-)
Type: pfam
Location: 801909 - 802598 (-)
Gene ID: A43_contig_103_660
Type: CAZyme
Location: 802687 - 804069 (-)
Type: CAZyme
Location: 802687 - 804069 (-)
Gene ID: A43_contig_103_661
Type: CAZyme
Location: 804132 - 806219 (-)
Type: CAZyme
Location: 804132 - 806219 (-)
Gene ID: A43_contig_103_662
Type: CAZyme
Location: 806550 - 808886 (-)
Type: CAZyme
Location: 806550 - 808886 (-)
Gene ID: A43_contig_103_663
Type: CAZyme
Location: 808980 - 812027 (+)
Type: CAZyme
Location: 808980 - 812027 (+)
Gene ID: A43_contig_103_664
Type: CAZyme
Location: 812158 - 813396 (+)
Type: CAZyme
Location: 812158 - 813396 (+)
Gene ID: A43_contig_103_665
Type: CAZyme
Location: 813452 - 814987 (+)
Type: CAZyme
Location: 813452 - 814987 (+)
Gene ID: A43_contig_103_666
Type: pfam
Location: 814938 - 815540 (+)
Type: pfam
Location: 814938 - 815540 (+)
Gene ID: A43_contig_103_667
Type: CAZyme
Location: 815537 - 816940 (+)
Type: CAZyme
Location: 815537 - 816940 (+)
Gene ID: A43_contig_103_668
Type: CAZyme
Location: 816940 - 819750 (+)
Type: CAZyme
Location: 816940 - 819750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_658 | vegan > omnivore | 1.17899 | 0.00290 |