Cluster: A43.bin_3_CGC14
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_02939
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_103 | A43_contig_103_623 | 734304 | 737447 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_624 | 737469 | 739139 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A43_contig_103 | A43_contig_103_625 | 739143 | 740849 | - | Fasciclin | Fasciclin | DUF5108 |
| TC | A43_contig_103 | A43_contig_103_626 | 740867 | 742405 | - | 8.A.46.1.2 |
| TC | A43_contig_103 | A43_contig_103_627 | 742419 | 745670 | - | 1.B.14.6.1 |
| pfam | A43_contig_103 | A43_contig_103_628 | 745691 | 747991 | - | Fasciclin |
| CAZyme | A43_contig_103 | A43_contig_103_629 | 748052 | 749737 | - | PL1_2 |
| CAZyme | A43_contig_103 | A43_contig_103_630 | 749821 | 752352 | - | CE20 | GH105 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_631 | 752413 | 752553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A43_contig_103 | A43_contig_103_632 | 752560 | 753870 | - | GH28 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_633 | 754166 | 754600 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A43_contig_103 | A43_contig_103_634 | 754647 | 756191 | - | PL9_1 |
| CAZyme | A43_contig_103 | A43_contig_103_635 | 756705 | 758168 | - | GH28 |
| CAZyme | A43_contig_103 | A43_contig_103_636 | 758344 | 760290 | + | PL11 |
| CAZyme | A43_contig_103 | A43_contig_103_637 | 760305 | 763268 | + | GH2 |
Gene ID: A43_contig_103_623
Type: TC
Location: 734304 - 737447 (-)
Type: TC
Location: 734304 - 737447 (-)
Gene ID: A43_contig_103_624
Type:
Location: 737469 - 739139 (-)
Type:
Location: 737469 - 739139 (-)
Gene ID: A43_contig_103_625
Type: pfam
Location: 739143 - 740849 (-)
Type: pfam
Location: 739143 - 740849 (-)
Gene ID: A43_contig_103_626
Type: TC
Location: 740867 - 742405 (-)
Type: TC
Location: 740867 - 742405 (-)
Gene ID: A43_contig_103_627
Type: TC
Location: 742419 - 745670 (-)
Type: TC
Location: 742419 - 745670 (-)
Gene ID: A43_contig_103_628
Type: pfam
Location: 745691 - 747991 (-)
Type: pfam
Location: 745691 - 747991 (-)
Gene ID: A43_contig_103_629
Type: CAZyme
Location: 748052 - 749737 (-)
Type: CAZyme
Location: 748052 - 749737 (-)
Gene ID: A43_contig_103_630
Type: CAZyme
Location: 749821 - 752352 (-)
Type: CAZyme
Location: 749821 - 752352 (-)
Gene ID: A43_contig_103_631
Type:
Location: 752413 - 752553 (-)
Type:
Location: 752413 - 752553 (-)
Gene ID: A43_contig_103_632
Type: CAZyme
Location: 752560 - 753870 (-)
Type: CAZyme
Location: 752560 - 753870 (-)
Gene ID: A43_contig_103_633
Type:
Location: 754166 - 754600 (-)
Type:
Location: 754166 - 754600 (-)
Gene ID: A43_contig_103_634
Type: CAZyme
Location: 754647 - 756191 (-)
Type: CAZyme
Location: 754647 - 756191 (-)
Gene ID: A43_contig_103_635
Type: CAZyme
Location: 756705 - 758168 (-)
Type: CAZyme
Location: 756705 - 758168 (-)
Gene ID: A43_contig_103_636
Type: CAZyme
Location: 758344 - 760290 (+)
Type: CAZyme
Location: 758344 - 760290 (+)
Gene ID: A43_contig_103_637
Type: CAZyme
Location: 760305 - 763268 (+)
Type: CAZyme
Location: 760305 - 763268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_630 | vegan > omnivore | 1.01498 | 0.00290 |
| A43_contig_103_631 | vegan > omnivore | 1.14769 | 0.00290 |
| A43_contig_103_633 | vegan > omnivore | 1.72651 | 0.00290 |
| A43_contig_103_633 | vegetarian > omnivore | 1.24330 | 0.03791 |
| A43_contig_103_634 | vegan > omnivore | 1.40946 | 0.00290 |