Cluster: A38.bin_27_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: A38.bin_27
- CGC Family ID: CGCFAM_01564
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A38_contig_1344 | A38_contig_1344_389 | 444340 | 446559 | + | GT2 | GT2 |
| CAZyme | A38_contig_1344 | A38_contig_1344_390 | 446579 | 447724 | + | GT2 |
| CAZyme | A38_contig_1344 | A38_contig_1344_391 | 447726 | 448703 | + | GT2 |
| CAZyme | A38_contig_1344 | A38_contig_1344_392 | 448684 | 449895 | + | GT2 |
| NULL(UNKNOWN) | A38_contig_1344 | A38_contig_1344_393 | 450052 | 451386 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A38_contig_1344 | A38_contig_1344_394 | 451420 | 452415 | + | Big_2 | Big_2 |
| TC | A38_contig_1344 | A38_contig_1344_395 | 452513 | 453229 | + | 9.B.27.1.1 |
| CAZyme | A38_contig_1344 | A38_contig_1344_396 | 453219 | 454556 | + | GT2 |
| pfam | A38_contig_1344 | A38_contig_1344_397 | 454582 | 455607 | + | APH |
| TC | A38_contig_1344 | A38_contig_1344_398 | 455649 | 456896 | + | 3.A.1.19.4 |
| pfam | A38_contig_1344 | A38_contig_1344_399 | 456936 | 457832 | + | BPD_transp_1 |
| pfam | A38_contig_1344 | A38_contig_1344_400 | 457819 | 458631 | + | BPD_transp_1 |
| TC | A38_contig_1344 | A38_contig_1344_401 | 458687 | 459718 | + | 3.A.1.11.8 |
Gene ID: A38_contig_1344_389
Type: CAZyme
Location: 444340 - 446559 (+)
Type: CAZyme
Location: 444340 - 446559 (+)
Gene ID: A38_contig_1344_390
Type: CAZyme
Location: 446579 - 447724 (+)
Type: CAZyme
Location: 446579 - 447724 (+)
Gene ID: A38_contig_1344_391
Type: CAZyme
Location: 447726 - 448703 (+)
Type: CAZyme
Location: 447726 - 448703 (+)
Gene ID: A38_contig_1344_392
Type: CAZyme
Location: 448684 - 449895 (+)
Type: CAZyme
Location: 448684 - 449895 (+)
Gene ID: A38_contig_1344_393
Type:
Location: 450052 - 451386 (+)
Type:
Location: 450052 - 451386 (+)
Gene ID: A38_contig_1344_394
Type: pfam
Location: 451420 - 452415 (+)
Type: pfam
Location: 451420 - 452415 (+)
Gene ID: A38_contig_1344_395
Type: TC
Location: 452513 - 453229 (+)
Type: TC
Location: 452513 - 453229 (+)
Gene ID: A38_contig_1344_396
Type: CAZyme
Location: 453219 - 454556 (+)
Type: CAZyme
Location: 453219 - 454556 (+)
Gene ID: A38_contig_1344_397
Type: pfam
Location: 454582 - 455607 (+)
Type: pfam
Location: 454582 - 455607 (+)
Gene ID: A38_contig_1344_398
Type: TC
Location: 455649 - 456896 (+)
Type: TC
Location: 455649 - 456896 (+)
Gene ID: A38_contig_1344_399
Type: pfam
Location: 456936 - 457832 (+)
Type: pfam
Location: 456936 - 457832 (+)
Gene ID: A38_contig_1344_400
Type: pfam
Location: 457819 - 458631 (+)
Type: pfam
Location: 457819 - 458631 (+)
Gene ID: A38_contig_1344_401
Type: TC
Location: 458687 - 459718 (+)
Type: TC
Location: 458687 - 459718 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_D
Species
Dorea_D hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.