Cluster: A38.bin_27_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: A38.bin_27
- CGC Family ID: CGCFAM_00054
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A38_contig_875 | A38_contig_875_189 | 207288 | 208706 | + | 2.A.2.1.1 |
| CAZyme | A38_contig_875 | A38_contig_875_190 | 208730 | 210961 | + | GH36 |
| TC | A38_contig_875 | A38_contig_875_191 | 210977 | 211600 | + | 2.A.115.2.3 |
Gene ID: A38_contig_875_189
Type: TC
Location: 207288 - 208706 (+)
Type: TC
Location: 207288 - 208706 (+)
Gene ID: A38_contig_875_190
Type: CAZyme
Location: 208730 - 210961 (+)
Type: CAZyme
Location: 208730 - 210961 (+)
Gene ID: A38_contig_875_191
Type: TC
Location: 210977 - 211600 (+)
Type: TC
Location: 210977 - 211600 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea_D
Species
Dorea_D hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A38_contig_875_189 | vegan > omnivore | 2.06897 | 0.03778 |
| A38_contig_875_189 | vegetarian > omnivore | 1.61143 | 0.03201 |
| A38_contig_875_190 | vegan > omnivore | 1.35750 | 0.03778 |
| A38_contig_875_190 | vegetarian > omnivore | 1.06831 | 0.03201 |
| A38_contig_875_191 | vegan > omnivore | 1.45654 | 0.03778 |