Cluster: A36.bin_19_CGC21
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 3
- Substrate:
- Genome ID: A36.bin_19
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A36_contig_250 | A36_contig_250_1439 | 1669804 | 1670550 | - | 3.A.1.14.8 |
| TC | A36_contig_250 | A36_contig_250_1440 | 1670601 | 1671677 | - | 3.A.1.14.9 |
| STP | A36_contig_250 | A36_contig_250_1441 | 1671665 | 1672747 | - | Peripla_BP_2 |
| NULL(UNKNOWN) | A36_contig_250 | A36_contig_250_1442 | 1672950 | 1673057 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A36_contig_250 | A36_contig_250_1443 | 1673553 | 1674389 | - | 2.A.115.1.1 |
| TF | A36_contig_250 | A36_contig_250_1444 | 1674914 | 1675900 | - | HTH_AraC |
| pfam | A36_contig_250 | A36_contig_250_1445 | 1676472 | 1677341 | - | Glyco_hydro_3_C |
| TC | A36_contig_250 | A36_contig_250_1446 | 1677338 | 1677622 | - | 2.A.2.1.1 |
| CAZyme | A36_contig_250 | A36_contig_250_1447 | 1677723 | 1679993 | - | GH2 |
| TF | A36_contig_250 | A36_contig_250_1448 | 1680225 | 1681682 | + | HTH_AraC | HTH_AraC |
| pfam | A36_contig_250 | A36_contig_250_1449 | 1681701 | 1682252 | - | Pro_CA |
| CAZyme | A36_contig_250 | A36_contig_250_1450 | 1682618 | 1684177 | - | GH77 |
| pfam | A36_contig_250 | A36_contig_250_1451 | 1684251 | 1685108 | - | Exo_endo_phos |
| TC | A36_contig_250 | A36_contig_250_1452 | 1685394 | 1687631 | - | 4.A.1.1.11 |
| TF | A36_contig_250 | A36_contig_250_1453 | 1688283 | 1689317 | + | LacI |
| CAZyme | A36_contig_250 | A36_contig_250_1454 | 1689518 | 1690669 | - | GT4 |
| TC | A36_contig_250 | A36_contig_250_1455 | 1690913 | 1692430 | - | 8.A.59.4.1 |
| pfam | A36_contig_250 | A36_contig_250_1456 | 1692652 | 1693458 | - | TatD_DNase |
| TC | A36_contig_250 | A36_contig_250_1457 | 1693455 | 1694201 | - | 3.A.1.17.8 |
| TC | A36_contig_250 | A36_contig_250_1458 | 1694224 | 1695327 | - | 3.A.1.17.8 |
| TC | A36_contig_250 | A36_contig_250_1459 | 1695444 | 1696217 | - | 3.A.1.17.13 |
| TC | A36_contig_250 | A36_contig_250_1460 | 1696551 | 1699217 | - | 1.A.33.1.4 |
| pfam | A36_contig_250 | A36_contig_250_1461 | 1699218 | 1701569 | - | Lactamase_B | Lactamase_B_2 | Lactamase_B_6 |
| NULL(UNKNOWN) | A36_contig_250 | A36_contig_250_1462 | 1705062 | 1705220 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A36_contig_250 | A36_contig_250_1463 | 1707560 | 1708900 | - | 2.A.66.1.28 |
| TC | A36_contig_250 | A36_contig_250_1464 | 1709528 | 1712932 | - | 2.A.56.1.1 |
Gene ID: A36_contig_250_1439
Type: TC
Location: 1669804 - 1670550 (-)
Type: TC
Location: 1669804 - 1670550 (-)
Gene ID: A36_contig_250_1440
Type: TC
Location: 1670601 - 1671677 (-)
Type: TC
Location: 1670601 - 1671677 (-)
Gene ID: A36_contig_250_1441
Type: STP
Location: 1671665 - 1672747 (-)
Type: STP
Location: 1671665 - 1672747 (-)
Gene ID: A36_contig_250_1442
Type:
Location: 1672950 - 1673057 (-)
Type:
Location: 1672950 - 1673057 (-)
Gene ID: A36_contig_250_1443
Type: TC
Location: 1673553 - 1674389 (-)
Type: TC
Location: 1673553 - 1674389 (-)
Gene ID: A36_contig_250_1444
Type: TF
Location: 1674914 - 1675900 (-)
Type: TF
Location: 1674914 - 1675900 (-)
Gene ID: A36_contig_250_1445
Type: pfam
Location: 1676472 - 1677341 (-)
Type: pfam
Location: 1676472 - 1677341 (-)
Gene ID: A36_contig_250_1446
Type: TC
Location: 1677338 - 1677622 (-)
Type: TC
Location: 1677338 - 1677622 (-)
Gene ID: A36_contig_250_1447
Type: CAZyme
Location: 1677723 - 1679993 (-)
Type: CAZyme
Location: 1677723 - 1679993 (-)
Gene ID: A36_contig_250_1448
Type: TF
Location: 1680225 - 1681682 (+)
Type: TF
Location: 1680225 - 1681682 (+)
Gene ID: A36_contig_250_1449
Type: pfam
Location: 1681701 - 1682252 (-)
Type: pfam
Location: 1681701 - 1682252 (-)
Gene ID: A36_contig_250_1450
Type: CAZyme
Location: 1682618 - 1684177 (-)
Type: CAZyme
Location: 1682618 - 1684177 (-)
Gene ID: A36_contig_250_1451
Type: pfam
Location: 1684251 - 1685108 (-)
Type: pfam
Location: 1684251 - 1685108 (-)
Gene ID: A36_contig_250_1452
Type: TC
Location: 1685394 - 1687631 (-)
Type: TC
Location: 1685394 - 1687631 (-)
Gene ID: A36_contig_250_1453
Type: TF
Location: 1688283 - 1689317 (+)
Type: TF
Location: 1688283 - 1689317 (+)
Gene ID: A36_contig_250_1454
Type: CAZyme
Location: 1689518 - 1690669 (-)
Type: CAZyme
Location: 1689518 - 1690669 (-)
Gene ID: A36_contig_250_1455
Type: TC
Location: 1690913 - 1692430 (-)
Type: TC
Location: 1690913 - 1692430 (-)
Gene ID: A36_contig_250_1456
Type: pfam
Location: 1692652 - 1693458 (-)
Type: pfam
Location: 1692652 - 1693458 (-)
Gene ID: A36_contig_250_1457
Type: TC
Location: 1693455 - 1694201 (-)
Type: TC
Location: 1693455 - 1694201 (-)
Gene ID: A36_contig_250_1458
Type: TC
Location: 1694224 - 1695327 (-)
Type: TC
Location: 1694224 - 1695327 (-)
Gene ID: A36_contig_250_1459
Type: TC
Location: 1695444 - 1696217 (-)
Type: TC
Location: 1695444 - 1696217 (-)
Gene ID: A36_contig_250_1460
Type: TC
Location: 1696551 - 1699217 (-)
Type: TC
Location: 1696551 - 1699217 (-)
Gene ID: A36_contig_250_1461
Type: pfam
Location: 1699218 - 1701569 (-)
Type: pfam
Location: 1699218 - 1701569 (-)
Gene ID: A36_contig_250_1462
Type:
Location: 1705062 - 1705220 (-)
Type:
Location: 1705062 - 1705220 (-)
Gene ID: A36_contig_250_1463
Type: TC
Location: 1707560 - 1708900 (-)
Type: TC
Location: 1707560 - 1708900 (-)
Gene ID: A36_contig_250_1464
Type: TC
Location: 1709528 - 1712932 (-)
Type: TC
Location: 1709528 - 1712932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola catenula
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.