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Cluster: A34.bin_17_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A34_contig_705 A34_contig_705_1145 1277009 1277923 + CE4
pfam A34_contig_705 A34_contig_705_1146 1277994 1278701 + VanZ
pfam A34_contig_705 A34_contig_705_1147 1278718 1279560 + GHMP_kinases_N | GHMP_kinases_C
TC A34_contig_705 A34_contig_705_1148 1279844 1281226 - 2.A.22.5.3
pfam A34_contig_705 A34_contig_705_1149 1281456 1282400 + Ldh_1_N | Ldh_1_C
pfam A34_contig_705 A34_contig_705_1150 1282415 1283791 + Lyase_1 | FumaraseC_C
TC A34_contig_705 A34_contig_705_1151 1283812 1284618 + 3.D.10.1.4
Gene ID: A34_contig_705_1145
Type: CAZyme
Location: 1277009 - 1277923 (+)
Gene ID: A34_contig_705_1146
Type: pfam
Location: 1277994 - 1278701 (+)
Gene ID: A34_contig_705_1147
Type: pfam
Location: 1278718 - 1279560 (+)
Gene ID: A34_contig_705_1148
Type: TC
Location: 1279844 - 1281226 (-)
Gene ID: A34_contig_705_1149
Type: pfam
Location: 1281456 - 1282400 (+)
Gene ID: A34_contig_705_1150
Type: pfam
Location: 1282415 - 1283791 (+)
Gene ID: A34_contig_705_1151
Type: TC
Location: 1283812 - 1284618 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A34_contig_705_1146 vegetarian > vegan 2.15975 0.00050
A34_contig_705_1147 vegetarian > vegan 1.59353 0.00050
A34_contig_705_1149 vegetarian > vegan 2.21516 0.00050
A34_contig_705_1151 vegetarian > vegan 4.05720 0.00050

🧭 Explore Read Mapping of CGC

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