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Cluster: A19.bin_50_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A19_contig_3778 A19_contig_3778_79 87136 88920 + 3.A.2.2.2
TC A19_contig_3778 A19_contig_3778_80 88981 90369 + 3.A.2.2.2
TC A19_contig_3778 A19_contig_3778_81 90524 91171 + 3.A.2.2.2
CAZyme A19_contig_3778 A19_contig_3778_82 92188 96306 - CE20
TF A19_contig_3778 A19_contig_3778_83 96536 97606 + GntR
CAZyme A19_contig_3778 A19_contig_3778_84 97626 99260 + GH123
NULL(UNKNOWN) A19_contig_3778 A19_contig_3778_85 99360 99698 + NULL(UNKNOWN)
[View Structural Homologs]
TF A19_contig_3778 A19_contig_3778_86 99743 100570 - MerR
TC A19_contig_3778 A19_contig_3778_87 100712 102442 + 3.A.1.135.7
TC A19_contig_3778 A19_contig_3778_88 102435 104231 + 3.A.1.135.7
TF A19_contig_3778 A19_contig_3778_89 104372 104821 + MarR
TC A19_contig_3778 A19_contig_3778_90 104818 106536 + 3.A.1.135.7
TC A19_contig_3778 A19_contig_3778_91 106526 108298 + 3.A.1.135.5
TC A19_contig_3778 A19_contig_3778_92 108372 110234 - 3.A.3.6.10
Gene ID: A19_contig_3778_79
Type: TC
Location: 87136 - 88920 (+)
Gene ID: A19_contig_3778_80
Type: TC
Location: 88981 - 90369 (+)
Gene ID: A19_contig_3778_81
Type: TC
Location: 90524 - 91171 (+)
Gene ID: A19_contig_3778_82
Type: CAZyme
Location: 92188 - 96306 (-)
Gene ID: A19_contig_3778_83
Type: TF
Location: 96536 - 97606 (+)
Gene ID: A19_contig_3778_84
Type: CAZyme
Location: 97626 - 99260 (+)
Gene ID: A19_contig_3778_85
Type:
Location: 99360 - 99698 (+)
Gene ID: A19_contig_3778_86
Type: TF
Location: 99743 - 100570 (-)
Gene ID: A19_contig_3778_87
Type: TC
Location: 100712 - 102442 (+)
Gene ID: A19_contig_3778_88
Type: TC
Location: 102435 - 104231 (+)
Gene ID: A19_contig_3778_89
Type: TF
Location: 104372 - 104821 (+)
Gene ID: A19_contig_3778_90
Type: TC
Location: 104818 - 106536 (+)
Gene ID: A19_contig_3778_91
Type: TC
Location: 106526 - 108298 (+)
Gene ID: A19_contig_3778_92
Type: TC
Location: 108372 - 110234 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A19_contig_3778_79 vegetarian > vegan 1.16958 0.00085
A19_contig_3778_80 omnivore > vegan 1.02801 0.01518

🧭 Explore Read Mapping of CGC

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