Cluster: A19.CMAG_6_CGC5
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: A19.CMAG_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A19_contig_3938 | A19_contig_3938_228 | 262748 | 265360 | + | 3.A.9.1.2 |
| TC | A19_contig_3938 | A19_contig_3938_229 | 265416 | 267038 | - | 8.A.7.1.1 |
| STP | A19_contig_3938 | A19_contig_3938_230 | 267072 | 267341 | - | PTS-HPr |
| TC | A19_contig_3938 | A19_contig_3938_231 | 267442 | 269361 | - | 4.A.2.1.20 |
| STP | A19_contig_3938 | A19_contig_3938_232 | 269388 | 270290 | - | PfkB |
| TF | A19_contig_3938 | A19_contig_3938_233 | 270290 | 271036 | - | HTH_DeoR |
| TC | A19_contig_3938 | A19_contig_3938_234 | 271368 | 272087 | + | 2.A.78.1.1 |
| TC | A19_contig_3938 | A19_contig_3938_235 | 272080 | 272418 | + | 2.A.78.1.1 |
| NULL(UNKNOWN) | A19_contig_3938 | A19_contig_3938_236 | 272479 | 273564 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A19_contig_3938 | A19_contig_3938_237 | 273561 | 274679 | - | NAGPA |
| CAZyme | A19_contig_3938 | A19_contig_3938_238 | 274691 | 275752 | - | GT2 |
| NULL(UNKNOWN) | A19_contig_3938 | A19_contig_3938_239 | 276359 | 278206 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A19_contig_3938 | A19_contig_3938_240 | 278339 | 278752 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | A19_contig_3938 | A19_contig_3938_241 | 278763 | 280148 | - | 3.A.2.1.5 |
| TC | A19_contig_3938 | A19_contig_3938_242 | 280145 | 281068 | - | 3.A.2.1.5 |
| TC | A19_contig_3938 | A19_contig_3938_243 | 281080 | 282855 | - | 3.A.2.1.5 |
Gene ID: A19_contig_3938_228
Type: TC
Location: 262748 - 265360 (+)
Type: TC
Location: 262748 - 265360 (+)
Gene ID: A19_contig_3938_229
Type: TC
Location: 265416 - 267038 (-)
Type: TC
Location: 265416 - 267038 (-)
Gene ID: A19_contig_3938_230
Type: STP
Location: 267072 - 267341 (-)
Type: STP
Location: 267072 - 267341 (-)
Gene ID: A19_contig_3938_231
Type: TC
Location: 267442 - 269361 (-)
Type: TC
Location: 267442 - 269361 (-)
Gene ID: A19_contig_3938_232
Type: STP
Location: 269388 - 270290 (-)
Type: STP
Location: 269388 - 270290 (-)
Gene ID: A19_contig_3938_233
Type: TF
Location: 270290 - 271036 (-)
Type: TF
Location: 270290 - 271036 (-)
Gene ID: A19_contig_3938_234
Type: TC
Location: 271368 - 272087 (+)
Type: TC
Location: 271368 - 272087 (+)
Gene ID: A19_contig_3938_235
Type: TC
Location: 272080 - 272418 (+)
Type: TC
Location: 272080 - 272418 (+)
Gene ID: A19_contig_3938_236
Type:
Location: 272479 - 273564 (-)
Type:
Location: 272479 - 273564 (-)
Gene ID: A19_contig_3938_237
Type: pfam
Location: 273561 - 274679 (-)
Type: pfam
Location: 273561 - 274679 (-)
Gene ID: A19_contig_3938_238
Type: CAZyme
Location: 274691 - 275752 (-)
Type: CAZyme
Location: 274691 - 275752 (-)
Gene ID: A19_contig_3938_239
Type:
Location: 276359 - 278206 (+)
Type:
Location: 276359 - 278206 (+)
Gene ID: A19_contig_3938_240
Type: pfam
Location: 278339 - 278752 (-)
Type: pfam
Location: 278339 - 278752 (-)
Gene ID: A19_contig_3938_241
Type: TC
Location: 278763 - 280148 (-)
Type: TC
Location: 278763 - 280148 (-)
Gene ID: A19_contig_3938_242
Type: TC
Location: 280145 - 281068 (-)
Type: TC
Location: 280145 - 281068 (-)
Gene ID: A19_contig_3938_243
Type: TC
Location: 281080 - 282855 (-)
Type: TC
Location: 281080 - 282855 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp003507295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A19_contig_3938_237 | vegetarian > vegan | 1.78483 | 0.03157 |
| A19_contig_3938_240 | vegetarian > vegan | 1.45704 | 0.03157 |