Cluster: A165.bin_10_CGC54
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: A165.bin_10
- CGC Family ID: CGCFAM_01075
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A165_contig_119 | A165_contig_119_1851 | 2350722 | 2352725 | - | GH172 |
| TF | A165_contig_119 | A165_contig_119_1852 | 2352960 | 2353847 | + | HTH_AraC |
| CAZyme | A165_contig_119 | A165_contig_119_1853 | 2354114 | 2355091 | + | GH5_2 |
| TC | A165_contig_119 | A165_contig_119_1854 | 2355232 | 2358483 | + | 1.B.14.6.1 |
| pfam | A165_contig_119 | A165_contig_119_1855 | 2358496 | 2360259 | + | SusD_RagB | SusD-like_3 |
| pfam | A165_contig_119 | A165_contig_119_1856 | 2360291 | 2361463 | + | TIG | SGBP_B_XBD |
| CAZyme | A165_contig_119 | A165_contig_119_1857 | 2361539 | 2362630 | + | GH5_5 |
| CAZyme | A165_contig_119 | A165_contig_119_1858 | 2362742 | 2365342 | + | GH2 |
| CAZyme | A165_contig_119 | A165_contig_119_1859 | 2365367 | 2366407 | + | GH5_5 |
| CAZyme | A165_contig_119 | A165_contig_119_1860 | 2366412 | 2367773 | + | GH140 |
| CAZyme | A165_contig_119 | A165_contig_119_1861 | 2367801 | 2368970 | + | GH130_1 |
| TC | A165_contig_119 | A165_contig_119_1862 | 2368987 | 2370384 | + | 2.A.2.3.6 |
| CAZyme | A165_contig_119 | A165_contig_119_1863 | 2370402 | 2373041 | + | CBM67 | GH78 |
Gene ID: A165_contig_119_1851
Type: CAZyme
Location: 2350722 - 2352725 (-)
Type: CAZyme
Location: 2350722 - 2352725 (-)
Gene ID: A165_contig_119_1852
Type: TF
Location: 2352960 - 2353847 (+)
Type: TF
Location: 2352960 - 2353847 (+)
Gene ID: A165_contig_119_1853
Type: CAZyme
Location: 2354114 - 2355091 (+)
Type: CAZyme
Location: 2354114 - 2355091 (+)
Gene ID: A165_contig_119_1854
Type: TC
Location: 2355232 - 2358483 (+)
Type: TC
Location: 2355232 - 2358483 (+)
Gene ID: A165_contig_119_1855
Type: pfam
Location: 2358496 - 2360259 (+)
Type: pfam
Location: 2358496 - 2360259 (+)
Gene ID: A165_contig_119_1856
Type: pfam
Location: 2360291 - 2361463 (+)
Type: pfam
Location: 2360291 - 2361463 (+)
Gene ID: A165_contig_119_1857
Type: CAZyme
Location: 2361539 - 2362630 (+)
Type: CAZyme
Location: 2361539 - 2362630 (+)
Gene ID: A165_contig_119_1858
Type: CAZyme
Location: 2362742 - 2365342 (+)
Type: CAZyme
Location: 2362742 - 2365342 (+)
Gene ID: A165_contig_119_1859
Type: CAZyme
Location: 2365367 - 2366407 (+)
Type: CAZyme
Location: 2365367 - 2366407 (+)
Gene ID: A165_contig_119_1860
Type: CAZyme
Location: 2366412 - 2367773 (+)
Type: CAZyme
Location: 2366412 - 2367773 (+)
Gene ID: A165_contig_119_1861
Type: CAZyme
Location: 2367801 - 2368970 (+)
Type: CAZyme
Location: 2367801 - 2368970 (+)
Gene ID: A165_contig_119_1862
Type: TC
Location: 2368987 - 2370384 (+)
Type: TC
Location: 2368987 - 2370384 (+)
Gene ID: A165_contig_119_1863
Type: CAZyme
Location: 2370402 - 2373041 (+)
Type: CAZyme
Location: 2370402 - 2373041 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
OM05-12
Species
OM05-12 sp003438995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.