Cluster: A165.bin_10_CGC34
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 12
- Substrate: arabinogalactan/pectin
- Genome ID: A165.bin_10
- CGC Family ID: CGCFAM_00212
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A165_contig_119 | A165_contig_119_420 | 546980 | 548551 | - | 2.A.21.3.19 |
| STP | A165_contig_119 | A165_contig_119_421 | 548567 | 550363 | - | B12-binding | B12-binding_2 |
| CAZyme | A165_contig_119 | A165_contig_119_422 | 550375 | 552621 | - | GH31_3 |
| CAZyme | A165_contig_119 | A165_contig_119_423 | 552639 | 554507 | - | GH141 |
| NULL(UNKNOWN) | A165_contig_119 | A165_contig_119_424 | 554736 | 555797 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A165_contig_119 | A165_contig_119_425 | 555811 | 557754 | - | CE19 |
| CAZyme | A165_contig_119 | A165_contig_119_426 | 557783 | 559126 | - | GH28 |
| CAZyme | A165_contig_119 | A165_contig_119_427 | 559123 | 561891 | - | CBM67 | GH78 |
| CAZyme | A165_contig_119 | A165_contig_119_428 | 561904 | 565218 | - | GH142 | GH143 |
| CAZyme | A165_contig_119 | A165_contig_119_429 | 565227 | 566153 | - | GH43_18 |
| CAZyme | A165_contig_119 | A165_contig_119_430 | 566378 | 568147 | - | PL1_2 |
| pfam | A165_contig_119 | A165_contig_119_431 | 568332 | 569015 | - | DUF3826 |
| CAZyme | A165_contig_119 | A165_contig_119_432 | 569023 | 570762 | - | PL1_2 |
| CAZyme | A165_contig_119 | A165_contig_119_433 | 570946 | 573729 | - | PL1_2 |
| NULL(UNKNOWN) | A165_contig_119 | A165_contig_119_434 | 573824 | 576223 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A165_contig_119 | A165_contig_119_435 | 576905 | 578032 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A165_contig_119 | A165_contig_119_436 | 578138 | 579853 | - | PL1_2 |
| CAZyme | A165_contig_119 | A165_contig_119_437 | 579867 | 581336 | - | CE8 |
| pfam | A165_contig_119 | A165_contig_119_438 | 581407 | 583239 | - | SusD_RagB | SusD-like_3 |
| TC | A165_contig_119 | A165_contig_119_439 | 583248 | 586580 | - | 1.B.14.6.1 |
Gene ID: A165_contig_119_420
Type: TC
Location: 546980 - 548551 (-)
Type: TC
Location: 546980 - 548551 (-)
Gene ID: A165_contig_119_421
Type: STP
Location: 548567 - 550363 (-)
Type: STP
Location: 548567 - 550363 (-)
Gene ID: A165_contig_119_422
Type: CAZyme
Location: 550375 - 552621 (-)
Type: CAZyme
Location: 550375 - 552621 (-)
Gene ID: A165_contig_119_423
Type: CAZyme
Location: 552639 - 554507 (-)
Type: CAZyme
Location: 552639 - 554507 (-)
Gene ID: A165_contig_119_424
Type:
Location: 554736 - 555797 (-)
Type:
Location: 554736 - 555797 (-)
Gene ID: A165_contig_119_425
Type: CAZyme
Location: 555811 - 557754 (-)
Type: CAZyme
Location: 555811 - 557754 (-)
Gene ID: A165_contig_119_426
Type: CAZyme
Location: 557783 - 559126 (-)
Type: CAZyme
Location: 557783 - 559126 (-)
Gene ID: A165_contig_119_427
Type: CAZyme
Location: 559123 - 561891 (-)
Type: CAZyme
Location: 559123 - 561891 (-)
Gene ID: A165_contig_119_428
Type: CAZyme
Location: 561904 - 565218 (-)
Type: CAZyme
Location: 561904 - 565218 (-)
Gene ID: A165_contig_119_429
Type: CAZyme
Location: 565227 - 566153 (-)
Type: CAZyme
Location: 565227 - 566153 (-)
Gene ID: A165_contig_119_430
Type: CAZyme
Location: 566378 - 568147 (-)
Type: CAZyme
Location: 566378 - 568147 (-)
Gene ID: A165_contig_119_431
Type: pfam
Location: 568332 - 569015 (-)
Type: pfam
Location: 568332 - 569015 (-)
Gene ID: A165_contig_119_432
Type: CAZyme
Location: 569023 - 570762 (-)
Type: CAZyme
Location: 569023 - 570762 (-)
Gene ID: A165_contig_119_433
Type: CAZyme
Location: 570946 - 573729 (-)
Type: CAZyme
Location: 570946 - 573729 (-)
Gene ID: A165_contig_119_434
Type:
Location: 573824 - 576223 (-)
Type:
Location: 573824 - 576223 (-)
Gene ID: A165_contig_119_435
Type:
Location: 576905 - 578032 (-)
Type:
Location: 576905 - 578032 (-)
Gene ID: A165_contig_119_436
Type: CAZyme
Location: 578138 - 579853 (-)
Type: CAZyme
Location: 578138 - 579853 (-)
Gene ID: A165_contig_119_437
Type: CAZyme
Location: 579867 - 581336 (-)
Type: CAZyme
Location: 579867 - 581336 (-)
Gene ID: A165_contig_119_438
Type: pfam
Location: 581407 - 583239 (-)
Type: pfam
Location: 581407 - 583239 (-)
Gene ID: A165_contig_119_439
Type: TC
Location: 583248 - 586580 (-)
Type: TC
Location: 583248 - 586580 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
OM05-12
Species
OM05-12 sp003438995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.