Cluster: A165.bin_10_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: A165.bin_10
- CGC Family ID: CGCFAM_00821
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A165_contig_4255 | A165_contig_4255_683 | 838209 | 840386 | + | 1.B.14.10.1 |
| CAZyme | A165_contig_4255 | A165_contig_4255_684 | 840564 | 841877 | - | PL1 |
| TC | A165_contig_4255 | A165_contig_4255_685 | 842292 | 845507 | + | 1.B.14.6.1 |
| TC | A165_contig_4255 | A165_contig_4255_686 | 845527 | 847377 | + | 8.A.46.1.3 |
| pfam | A165_contig_4255 | A165_contig_4255_687 | 847412 | 849049 | + | DUF4957 | DUF5123 |
| TF | A165_contig_4255 | A165_contig_4255_688 | 849358 | 853791 | + | HTH_AraC |
| CAZyme | A165_contig_4255 | A165_contig_4255_689 | 853841 | 855586 | - | CE12 | CE8 |
| CAZyme | A165_contig_4255 | A165_contig_4255_690 | 855583 | 856536 | - | CE8 |
| CAZyme | A165_contig_4255 | A165_contig_4255_691 | 856539 | 857885 | - | PL1_2 |
| CAZyme | A165_contig_4255 | A165_contig_4255_692 | 857905 | 859131 | - | GH105 |
| TC | A165_contig_4255 | A165_contig_4255_693 | 859580 | 861019 | + | 2.A.1.14.25 |
Gene ID: A165_contig_4255_683
Type: TC
Location: 838209 - 840386 (+)
Type: TC
Location: 838209 - 840386 (+)
Gene ID: A165_contig_4255_684
Type: CAZyme
Location: 840564 - 841877 (-)
Type: CAZyme
Location: 840564 - 841877 (-)
Gene ID: A165_contig_4255_685
Type: TC
Location: 842292 - 845507 (+)
Type: TC
Location: 842292 - 845507 (+)
Gene ID: A165_contig_4255_686
Type: TC
Location: 845527 - 847377 (+)
Type: TC
Location: 845527 - 847377 (+)
Gene ID: A165_contig_4255_687
Type: pfam
Location: 847412 - 849049 (+)
Type: pfam
Location: 847412 - 849049 (+)
Gene ID: A165_contig_4255_688
Type: TF
Location: 849358 - 853791 (+)
Type: TF
Location: 849358 - 853791 (+)
Gene ID: A165_contig_4255_689
Type: CAZyme
Location: 853841 - 855586 (-)
Type: CAZyme
Location: 853841 - 855586 (-)
Gene ID: A165_contig_4255_690
Type: CAZyme
Location: 855583 - 856536 (-)
Type: CAZyme
Location: 855583 - 856536 (-)
Gene ID: A165_contig_4255_691
Type: CAZyme
Location: 856539 - 857885 (-)
Type: CAZyme
Location: 856539 - 857885 (-)
Gene ID: A165_contig_4255_692
Type: CAZyme
Location: 857905 - 859131 (-)
Type: CAZyme
Location: 857905 - 859131 (-)
Gene ID: A165_contig_4255_693
Type: TC
Location: 859580 - 861019 (+)
Type: TC
Location: 859580 - 861019 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
OM05-12
Species
OM05-12 sp003438995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.