Cluster: A152.bin_3_CGC69
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 7
- Substrate:
- Genome ID: A152.bin_3
- CGC Family ID: CGCFAM_06656
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A152_contig_1379 | A152_contig_1379_3737 | 4391676 | 4393463 | + | GH110 |
| pfam | A152_contig_1379 | A152_contig_1379_3738 | 4393495 | 4394649 | + | Flavin_Reduct | DUF4468 |
| pfam | A152_contig_1379 | A152_contig_1379_3739 | 4394730 | 4395488 | + | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | A152_contig_1379 | A152_contig_1379_3740 | 4395512 | 4396411 | + | 2.A.7.3.57 |
| pfam | A152_contig_1379 | A152_contig_1379_3741 | 4396439 | 4397092 | + | DUF3256 |
| pfam | A152_contig_1379 | A152_contig_1379_3742 | 4397073 | 4398158 | - | APH |
| CAZyme | A152_contig_1379 | A152_contig_1379_3743 | 4398180 | 4401515 | - | GH2 |
| TC | A152_contig_1379 | A152_contig_1379_3744 | 4401541 | 4402353 | - | 2.A.115.1.1 |
| CAZyme | A152_contig_1379 | A152_contig_1379_3745 | 4402543 | 4403937 | - | GH109 |
| CAZyme | A152_contig_1379 | A152_contig_1379_3746 | 4405040 | 4407307 | - | GH95 |
| NULL(UNKNOWN) | A152_contig_1379 | A152_contig_1379_3747 | 4407322 | 4407618 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A152_contig_1379 | A152_contig_1379_3748 | 4407490 | 4410261 | - | GH2 |
| pfam | A152_contig_1379 | A152_contig_1379_3749 | 4410388 | 4413681 | - | TPR_6 | TPR_8 | TPR_16 | DUF5107 |
| TC | A152_contig_1379 | A152_contig_1379_3750 | 4413695 | 4415074 | - | 2.A.1.1.55 |
| TF | A152_contig_1379 | A152_contig_1379_3751 | 4415212 | 4416108 | + | HTH_AraC | HTH_AraC |
| CAZyme | A152_contig_1379 | A152_contig_1379_3752 | 4416168 | 4418819 | - | GH3 |
| pfam | A152_contig_1379 | A152_contig_1379_3753 | 4418926 | 4420362 | - | PD40 | PD40 | PD40 |
| pfam | A152_contig_1379 | A152_contig_1379_3754 | 4420374 | 4421852 | - | DUF6057 | DUF6057 |
| TC | A152_contig_1379 | A152_contig_1379_3755 | 4421936 | 4423567 | - | 8.A.46.1.6 |
| TC | A152_contig_1379 | A152_contig_1379_3756 | 4423589 | 4426888 | - | 1.B.14.6.1 |
| pfam | A152_contig_1379 | A152_contig_1379_3757 | 4427203 | 4428963 | - | SusD_RagB | SusD-like_3 |
| TC | A152_contig_1379 | A152_contig_1379_3758 | 4428992 | 4432402 | - | 1.B.14.6.1 |
| pfam | A152_contig_1379 | A152_contig_1379_3759 | 4432698 | 4434464 | - | SusD_RagB | SusD-like_3 |
| TC | A152_contig_1379 | A152_contig_1379_3760 | 4434478 | 4437789 | - | 1.B.14.6.1 |
| TF | A152_contig_1379 | A152_contig_1379_3761 | 4438680 | 4439255 | + | GerE |
| STP | A152_contig_1379 | A152_contig_1379_3762 | 4439380 | 4440366 | + | FecR |
| TC | A152_contig_1379 | A152_contig_1379_3763 | 4440619 | 4444002 | + | 1.B.14.6.1 |
| TC | A152_contig_1379 | A152_contig_1379_3764 | 4444021 | 4445805 | + | 8.A.46.1.6 |
| CAZyme | A152_contig_1379 | A152_contig_1379_3765 | 4445889 | 4447139 | - | GH109 |
Gene ID: A152_contig_1379_3737
Type: CAZyme
Location: 4391676 - 4393463 (+)
Type: CAZyme
Location: 4391676 - 4393463 (+)
Gene ID: A152_contig_1379_3738
Type: pfam
Location: 4393495 - 4394649 (+)
Type: pfam
Location: 4393495 - 4394649 (+)
Gene ID: A152_contig_1379_3739
Type: pfam
Location: 4394730 - 4395488 (+)
Type: pfam
Location: 4394730 - 4395488 (+)
Gene ID: A152_contig_1379_3740
Type: TC
Location: 4395512 - 4396411 (+)
Type: TC
Location: 4395512 - 4396411 (+)
Gene ID: A152_contig_1379_3741
Type: pfam
Location: 4396439 - 4397092 (+)
Type: pfam
Location: 4396439 - 4397092 (+)
Gene ID: A152_contig_1379_3742
Type: pfam
Location: 4397073 - 4398158 (-)
Type: pfam
Location: 4397073 - 4398158 (-)
Gene ID: A152_contig_1379_3743
Type: CAZyme
Location: 4398180 - 4401515 (-)
Type: CAZyme
Location: 4398180 - 4401515 (-)
Gene ID: A152_contig_1379_3744
Type: TC
Location: 4401541 - 4402353 (-)
Type: TC
Location: 4401541 - 4402353 (-)
Gene ID: A152_contig_1379_3745
Type: CAZyme
Location: 4402543 - 4403937 (-)
Type: CAZyme
Location: 4402543 - 4403937 (-)
Gene ID: A152_contig_1379_3746
Type: CAZyme
Location: 4405040 - 4407307 (-)
Type: CAZyme
Location: 4405040 - 4407307 (-)
Gene ID: A152_contig_1379_3747
Type:
Location: 4407322 - 4407618 (+)
Type:
Location: 4407322 - 4407618 (+)
Gene ID: A152_contig_1379_3748
Type: CAZyme
Location: 4407490 - 4410261 (-)
Type: CAZyme
Location: 4407490 - 4410261 (-)
Gene ID: A152_contig_1379_3749
Type: pfam
Location: 4410388 - 4413681 (-)
Type: pfam
Location: 4410388 - 4413681 (-)
Gene ID: A152_contig_1379_3750
Type: TC
Location: 4413695 - 4415074 (-)
Type: TC
Location: 4413695 - 4415074 (-)
Gene ID: A152_contig_1379_3751
Type: TF
Location: 4415212 - 4416108 (+)
Type: TF
Location: 4415212 - 4416108 (+)
Gene ID: A152_contig_1379_3752
Type: CAZyme
Location: 4416168 - 4418819 (-)
Type: CAZyme
Location: 4416168 - 4418819 (-)
Gene ID: A152_contig_1379_3753
Type: pfam
Location: 4418926 - 4420362 (-)
Type: pfam
Location: 4418926 - 4420362 (-)
Gene ID: A152_contig_1379_3754
Type: pfam
Location: 4420374 - 4421852 (-)
Type: pfam
Location: 4420374 - 4421852 (-)
Gene ID: A152_contig_1379_3755
Type: TC
Location: 4421936 - 4423567 (-)
Type: TC
Location: 4421936 - 4423567 (-)
Gene ID: A152_contig_1379_3756
Type: TC
Location: 4423589 - 4426888 (-)
Type: TC
Location: 4423589 - 4426888 (-)
Gene ID: A152_contig_1379_3757
Type: pfam
Location: 4427203 - 4428963 (-)
Type: pfam
Location: 4427203 - 4428963 (-)
Gene ID: A152_contig_1379_3758
Type: TC
Location: 4428992 - 4432402 (-)
Type: TC
Location: 4428992 - 4432402 (-)
Gene ID: A152_contig_1379_3759
Type: pfam
Location: 4432698 - 4434464 (-)
Type: pfam
Location: 4432698 - 4434464 (-)
Gene ID: A152_contig_1379_3760
Type: TC
Location: 4434478 - 4437789 (-)
Type: TC
Location: 4434478 - 4437789 (-)
Gene ID: A152_contig_1379_3761
Type: TF
Location: 4438680 - 4439255 (+)
Type: TF
Location: 4438680 - 4439255 (+)
Gene ID: A152_contig_1379_3762
Type: STP
Location: 4439380 - 4440366 (+)
Type: STP
Location: 4439380 - 4440366 (+)
Gene ID: A152_contig_1379_3763
Type: TC
Location: 4440619 - 4444002 (+)
Type: TC
Location: 4440619 - 4444002 (+)
Gene ID: A152_contig_1379_3764
Type: TC
Location: 4444021 - 4445805 (+)
Type: TC
Location: 4444021 - 4445805 (+)
Gene ID: A152_contig_1379_3765
Type: CAZyme
Location: 4445889 - 4447139 (-)
Type: CAZyme
Location: 4445889 - 4447139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.