Cluster: A15.bin_6_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_00199
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_652 | A15_contig_652_257 | 297634 | 298926 | + | 3.A.1.1.28 |
| TC | A15_contig_652 | A15_contig_652_258 | 298959 | 299822 | + | 3.A.1.1.28 |
| TC | A15_contig_652 | A15_contig_652_259 | 299822 | 300667 | + | 3.A.1.1.28 |
| CAZyme | A15_contig_652 | A15_contig_652_260 | 300787 | 302976 | + | GH36 |
| CAZyme | A15_contig_652 | A15_contig_652_261 | 303011 | 304849 | + | GH13_4 |
Gene ID: A15_contig_652_257
Type: TC
Location: 297634 - 298926 (+)
Type: TC
Location: 297634 - 298926 (+)
Gene ID: A15_contig_652_258
Type: TC
Location: 298959 - 299822 (+)
Type: TC
Location: 298959 - 299822 (+)
Gene ID: A15_contig_652_259
Type: TC
Location: 299822 - 300667 (+)
Type: TC
Location: 299822 - 300667 (+)
Gene ID: A15_contig_652_260
Type: CAZyme
Location: 300787 - 302976 (+)
Type: CAZyme
Location: 300787 - 302976 (+)
Gene ID: A15_contig_652_261
Type: CAZyme
Location: 303011 - 304849 (+)
Type: CAZyme
Location: 303011 - 304849 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_652_261 | vegan > omnivore | 1.00807 | 0.00409 |
| A15_contig_652_261 | vegetarian > omnivore | 1.03587 | 0.00000 |