Cluster: A15.bin_6_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_02377
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_652 | A15_contig_652_237 | 267587 | 269881 | + | GH3 |
| TC | A15_contig_652 | A15_contig_652_238 | 269961 | 271349 | + | 2.A.2.3.5 |
| CAZyme | A15_contig_652 | A15_contig_652_239 | 271432 | 274176 | + | CBM67 | GH78 |
| peptidase | A15_contig_652 | A15_contig_652_240 | 274214 | 275179 | + | S09.UPW |
| pfam | A15_contig_652 | A15_contig_652_241 | 275269 | 275769 | + | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | A15_contig_652 | A15_contig_652_242 | 276002 | 276982 | + | GH43_2 |
| CAZyme | A15_contig_652 | A15_contig_652_243 | 276975 | 280172 | + | GH2 |
| TC | A15_contig_652 | A15_contig_652_244 | 280271 | 281677 | + | 2.A.2.3.5 |
| TF | A15_contig_652 | A15_contig_652_245 | 281674 | 282873 | - | HTH_AraC | HTH_AraC |
| CAZyme | A15_contig_652 | A15_contig_652_246 | 283072 | 285852 | + | CBM67 | GH78 |
| NULL(UNKNOWN) | A15_contig_652 | A15_contig_652_247 | 285954 | 286079 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A15_contig_652 | A15_contig_652_248 | 286278 | 287006 | + | GH43_24 |
Gene ID: A15_contig_652_237
Type: CAZyme
Location: 267587 - 269881 (+)
Type: CAZyme
Location: 267587 - 269881 (+)
Gene ID: A15_contig_652_238
Type: TC
Location: 269961 - 271349 (+)
Type: TC
Location: 269961 - 271349 (+)
Gene ID: A15_contig_652_239
Type: CAZyme
Location: 271432 - 274176 (+)
Type: CAZyme
Location: 271432 - 274176 (+)
Gene ID: A15_contig_652_240
Type: peptidase
Location: 274214 - 275179 (+)
Type: peptidase
Location: 274214 - 275179 (+)
Gene ID: A15_contig_652_241
Type: pfam
Location: 275269 - 275769 (+)
Type: pfam
Location: 275269 - 275769 (+)
Gene ID: A15_contig_652_242
Type: CAZyme
Location: 276002 - 276982 (+)
Type: CAZyme
Location: 276002 - 276982 (+)
Gene ID: A15_contig_652_243
Type: CAZyme
Location: 276975 - 280172 (+)
Type: CAZyme
Location: 276975 - 280172 (+)
Gene ID: A15_contig_652_244
Type: TC
Location: 280271 - 281677 (+)
Type: TC
Location: 280271 - 281677 (+)
Gene ID: A15_contig_652_245
Type: TF
Location: 281674 - 282873 (-)
Type: TF
Location: 281674 - 282873 (-)
Gene ID: A15_contig_652_246
Type: CAZyme
Location: 283072 - 285852 (+)
Type: CAZyme
Location: 283072 - 285852 (+)
Gene ID: A15_contig_652_247
Type:
Location: 285954 - 286079 (+)
Type:
Location: 285954 - 286079 (+)
Gene ID: A15_contig_652_248
Type: CAZyme
Location: 286278 - 287006 (+)
Type: CAZyme
Location: 286278 - 287006 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.