Cluster: A15.bin_6_CGC36
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_06662
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_313 | A15_contig_313_795 | 875383 | 876396 | + | 2.A.85.5.1 |
| pfam | A15_contig_313 | A15_contig_313_796 | 876807 | 877691 | + | DHDPS |
| peptidase | A15_contig_313 | A15_contig_313_797 | 877807 | 878733 | + | M19.UPW |
| TC | A15_contig_313 | A15_contig_313_798 | 878787 | 880139 | + | 2.A.66.1.28 |
| TF | A15_contig_313 | A15_contig_313_799 | 880197 | 881243 | + | HTH_AraC | HTH_AraC |
| CAZyme | A15_contig_313 | A15_contig_313_800 | 881414 | 884065 | + | GH106 |
| CAZyme | A15_contig_313 | A15_contig_313_801 | 884177 | 886573 | + | GH39 |
| TC | A15_contig_313 | A15_contig_313_802 | 886813 | 888192 | + | 2.A.2.3.2 |
Gene ID: A15_contig_313_795
Type: TC
Location: 875383 - 876396 (+)
Type: TC
Location: 875383 - 876396 (+)
Gene ID: A15_contig_313_796
Type: pfam
Location: 876807 - 877691 (+)
Type: pfam
Location: 876807 - 877691 (+)
Gene ID: A15_contig_313_797
Type: peptidase
Location: 877807 - 878733 (+)
Type: peptidase
Location: 877807 - 878733 (+)
Gene ID: A15_contig_313_798
Type: TC
Location: 878787 - 880139 (+)
Type: TC
Location: 878787 - 880139 (+)
Gene ID: A15_contig_313_799
Type: TF
Location: 880197 - 881243 (+)
Type: TF
Location: 880197 - 881243 (+)
Gene ID: A15_contig_313_800
Type: CAZyme
Location: 881414 - 884065 (+)
Type: CAZyme
Location: 881414 - 884065 (+)
Gene ID: A15_contig_313_801
Type: CAZyme
Location: 884177 - 886573 (+)
Type: CAZyme
Location: 884177 - 886573 (+)
Gene ID: A15_contig_313_802
Type: TC
Location: 886813 - 888192 (+)
Type: TC
Location: 886813 - 888192 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_313_796 | vegan > omnivore | 1.27903 | 0.00409 |
| A15_contig_313_796 | vegetarian > omnivore | 1.24057 | 0.00000 |
| A15_contig_313_797 | vegan > omnivore | 14.75503 | 0.00409 |
| A15_contig_313_797 | vegetarian > omnivore | 10.71199 | 0.00000 |
| A15_contig_313_798 | vegan > omnivore | 14.64919 | 0.00409 |
| A15_contig_313_798 | vegetarian > omnivore | 13.25601 | 0.00000 |
| A15_contig_313_799 | vegan > omnivore | 14.63861 | 0.00409 |
| A15_contig_313_799 | vegetarian > omnivore | 12.12080 | 0.00000 |