Cluster: A15.bin_6_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_00418
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_652 | A15_contig_652_227 | 253863 | 255170 | - | GT2 |
| STP | A15_contig_652 | A15_contig_652_228 | 255374 | 257641 | + | AAA |
| TC | A15_contig_652 | A15_contig_652_229 | 257689 | 258345 | - | 1.C.113.1.2 |
| pfam | A15_contig_652 | A15_contig_652_230 | 258575 | 259507 | - | AA_kinase |
| TC | A15_contig_652 | A15_contig_652_231 | 259656 | 261404 | + | 3.A.1.135.7 |
| TC | A15_contig_652 | A15_contig_652_232 | 261397 | 263151 | + | 3.A.1.135.5 |
Gene ID: A15_contig_652_227
Type: CAZyme
Location: 253863 - 255170 (-)
Type: CAZyme
Location: 253863 - 255170 (-)
Gene ID: A15_contig_652_228
Type: STP
Location: 255374 - 257641 (+)
Type: STP
Location: 255374 - 257641 (+)
Gene ID: A15_contig_652_229
Type: TC
Location: 257689 - 258345 (-)
Type: TC
Location: 257689 - 258345 (-)
Gene ID: A15_contig_652_230
Type: pfam
Location: 258575 - 259507 (-)
Type: pfam
Location: 258575 - 259507 (-)
Gene ID: A15_contig_652_231
Type: TC
Location: 259656 - 261404 (+)
Type: TC
Location: 259656 - 261404 (+)
Gene ID: A15_contig_652_232
Type: TC
Location: 261397 - 263151 (+)
Type: TC
Location: 261397 - 263151 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_652_227 | vegan > omnivore | 1.76070 | 0.00409 |
| A15_contig_652_228 | vegan > omnivore | 1.73123 | 0.00409 |
| A15_contig_652_229 | vegan > omnivore | 5.05848 | 0.00409 |
| A15_contig_652_229 | vegetarian > omnivore | 2.40772 | 0.00000 |
| A15_contig_652_230 | vegan > omnivore | 1.04570 | 0.00409 |
| A15_contig_652_231 | vegan > omnivore | 1.71494 | 0.00409 |