Cluster: A15.bin_6_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_00312
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_313 | A15_contig_313_250 | 254720 | 256873 | + | GH112 |
| TC | A15_contig_313 | A15_contig_313_251 | 256952 | 258259 | + | 3.A.1.1.4 |
| TC | A15_contig_313 | A15_contig_313_252 | 258332 | 259210 | + | 3.A.1.1.4 |
| TC | A15_contig_313 | A15_contig_313_253 | 259203 | 260009 | + | 3.A.1.1.4 |
| NULL(UNKNOWN) | A15_contig_313 | A15_contig_313_254 | 260009 | 260470 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A15_contig_313 | A15_contig_313_255 | 260421 | 261713 | + | GH136 |
Gene ID: A15_contig_313_250
Type: CAZyme
Location: 254720 - 256873 (+)
Type: CAZyme
Location: 254720 - 256873 (+)
Gene ID: A15_contig_313_251
Type: TC
Location: 256952 - 258259 (+)
Type: TC
Location: 256952 - 258259 (+)
Gene ID: A15_contig_313_252
Type: TC
Location: 258332 - 259210 (+)
Type: TC
Location: 258332 - 259210 (+)
Gene ID: A15_contig_313_253
Type: TC
Location: 259203 - 260009 (+)
Type: TC
Location: 259203 - 260009 (+)
Gene ID: A15_contig_313_254
Type:
Location: 260009 - 260470 (+)
Type:
Location: 260009 - 260470 (+)
Gene ID: A15_contig_313_255
Type: CAZyme
Location: 260421 - 261713 (+)
Type: CAZyme
Location: 260421 - 261713 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_313_250 | vegetarian > vegan | 1.60256 | 0.01057 |
| A15_contig_313_251 | vegetarian > vegan | 1.63797 | 0.01057 |
| A15_contig_313_252 | vegetarian > vegan | 1.63115 | 0.01057 |
| A15_contig_313_253 | vegetarian > vegan | 1.36439 | 0.01057 |