Cluster: A15.bin_6_CGC28
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_313 | A15_contig_313_208 | 206363 | 207163 | + | GT2 |
| CAZyme | A15_contig_313 | A15_contig_313_209 | 207173 | 207862 | + | GT2 |
| pfam | A15_contig_313 | A15_contig_313_210 | 207874 | 208224 | + | DUF2304 |
| TC | A15_contig_313 | A15_contig_313_211 | 208347 | 209123 | + | 3.A.1.103.6 |
| TC | A15_contig_313 | A15_contig_313_212 | 209139 | 209873 | + | 3.A.1.103.1 |
| NULL(UNKNOWN) | A15_contig_313 | A15_contig_313_213 | 209888 | 210490 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A15_contig_313 | A15_contig_313_214 | 210506 | 212683 | + | GT4 |
| CAZyme | A15_contig_313 | A15_contig_313_215 | 212685 | 214871 | + | GT4 | GT4 |
| pfam | A15_contig_313 | A15_contig_313_216 | 214861 | 216279 | + | DUF2142 |
| pfam | A15_contig_313 | A15_contig_313_217 | 216298 | 217545 | + | TOD1_MUCI70 |
| CAZyme | A15_contig_313 | A15_contig_313_218 | 217556 | 219298 | + | GT2 |
Gene ID: A15_contig_313_208
Type: CAZyme
Location: 206363 - 207163 (+)
Type: CAZyme
Location: 206363 - 207163 (+)
Gene ID: A15_contig_313_209
Type: CAZyme
Location: 207173 - 207862 (+)
Type: CAZyme
Location: 207173 - 207862 (+)
Gene ID: A15_contig_313_210
Type: pfam
Location: 207874 - 208224 (+)
Type: pfam
Location: 207874 - 208224 (+)
Gene ID: A15_contig_313_211
Type: TC
Location: 208347 - 209123 (+)
Type: TC
Location: 208347 - 209123 (+)
Gene ID: A15_contig_313_212
Type: TC
Location: 209139 - 209873 (+)
Type: TC
Location: 209139 - 209873 (+)
Gene ID: A15_contig_313_213
Type:
Location: 209888 - 210490 (+)
Type:
Location: 209888 - 210490 (+)
Gene ID: A15_contig_313_214
Type: CAZyme
Location: 210506 - 212683 (+)
Type: CAZyme
Location: 210506 - 212683 (+)
Gene ID: A15_contig_313_215
Type: CAZyme
Location: 212685 - 214871 (+)
Type: CAZyme
Location: 212685 - 214871 (+)
Gene ID: A15_contig_313_216
Type: pfam
Location: 214861 - 216279 (+)
Type: pfam
Location: 214861 - 216279 (+)
Gene ID: A15_contig_313_217
Type: pfam
Location: 216298 - 217545 (+)
Type: pfam
Location: 216298 - 217545 (+)
Gene ID: A15_contig_313_218
Type: CAZyme
Location: 217556 - 219298 (+)
Type: CAZyme
Location: 217556 - 219298 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_313_211 | vegan > omnivore | 6.46278 | 0.00409 |
| A15_contig_313_212 | vegan > omnivore | 5.81174 | 0.00409 |
| A15_contig_313_212 | vegetarian > omnivore | 3.52989 | 0.00000 |
| A15_contig_313_213 | vegan > omnivore | 15.27788 | 0.00409 |
| A15_contig_313_214 | vegan > omnivore | 1.33013 | 0.00409 |
| A15_contig_313_215 | vegan > omnivore | 15.22007 | 0.00409 |
| A15_contig_313_215 | vegetarian > omnivore | 10.47383 | 0.00000 |
| A15_contig_313_216 | vegan > omnivore | 15.01644 | 0.00409 |