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Cluster: A15.bin_6_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A15_contig_652 A15_contig_652_168 187615 188553 + 3.A.1.1.10
TC A15_contig_652 A15_contig_652_169 188570 189466 + 3.A.1.1.29
NULL(UNKNOWN) A15_contig_652 A15_contig_652_170 189488 191167 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A15_contig_652 A15_contig_652_171 191193 192677 + GH32
STP A15_contig_652 A15_contig_652_172 192828 193793 + PfkB
pfam A15_contig_652 A15_contig_652_173 193833 194282 - ThrE | ThrE_2
TC A15_contig_652 A15_contig_652_174 194337 195131 - 2.A.79.1.5
NULL(UNKNOWN) A15_contig_652 A15_contig_652_175 195239 195739 - NULL(UNKNOWN)
[View Structural Homologs]
pfam A15_contig_652 A15_contig_652_176 195741 196649 - HTH_30 | GGDEF_2
TC A15_contig_652 A15_contig_652_177 196800 197912 - 3.A.1.1.26
pfam A15_contig_652 A15_contig_652_178 198181 198699 + Pro_isomerase
TC A15_contig_652 A15_contig_652_179 198907 199770 + 3.A.1.26.7
TC A15_contig_652 A15_contig_652_180 199785 200633 + 3.A.1.26.7
TC A15_contig_652 A15_contig_652_181 200626 201450 + 3.A.1.26.7
pfam A15_contig_652 A15_contig_652_182 201467 202261 + PseudoU_synth_1 | PseudoU_synth_1
pfam A15_contig_652 A15_contig_652_183 202743 203681 + DHDPS
TC A15_contig_652 A15_contig_652_184 203751 205064 + 3.A.1.1.40
TC A15_contig_652 A15_contig_652_185 205159 206031 + 3.A.1.1.7
TC A15_contig_652 A15_contig_652_186 206031 206864 + 3.A.1.1.25
Gene ID: A15_contig_652_168
Type: TC
Location: 187615 - 188553 (+)
Gene ID: A15_contig_652_169
Type: TC
Location: 188570 - 189466 (+)
Gene ID: A15_contig_652_170
Type:
Location: 189488 - 191167 (+)
Gene ID: A15_contig_652_171
Type: CAZyme
Location: 191193 - 192677 (+)
Gene ID: A15_contig_652_172
Type: STP
Location: 192828 - 193793 (+)
Gene ID: A15_contig_652_173
Type: pfam
Location: 193833 - 194282 (-)
Gene ID: A15_contig_652_174
Type: TC
Location: 194337 - 195131 (-)
Gene ID: A15_contig_652_175
Type:
Location: 195239 - 195739 (-)
Gene ID: A15_contig_652_176
Type: pfam
Location: 195741 - 196649 (-)
Gene ID: A15_contig_652_177
Type: TC
Location: 196800 - 197912 (-)
Gene ID: A15_contig_652_178
Type: pfam
Location: 198181 - 198699 (+)
Gene ID: A15_contig_652_179
Type: TC
Location: 198907 - 199770 (+)
Gene ID: A15_contig_652_180
Type: TC
Location: 199785 - 200633 (+)
Gene ID: A15_contig_652_181
Type: TC
Location: 200626 - 201450 (+)
Gene ID: A15_contig_652_182
Type: pfam
Location: 201467 - 202261 (+)
Gene ID: A15_contig_652_183
Type: pfam
Location: 202743 - 203681 (+)
Gene ID: A15_contig_652_184
Type: TC
Location: 203751 - 205064 (+)
Gene ID: A15_contig_652_185
Type: TC
Location: 205159 - 206031 (+)
Gene ID: A15_contig_652_186
Type: TC
Location: 206031 - 206864 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A15_contig_652_172 vegan > omnivore 1.40967 0.00409
A15_contig_652_175 vegan > omnivore 15.31678 0.00409
A15_contig_652_175 vegetarian > omnivore 11.59935 0.00000
A15_contig_652_176 vegan > omnivore 15.10546 0.00409
A15_contig_652_176 vegetarian > omnivore 9.74111 0.00000
A15_contig_652_179 vegetarian > omnivore 1.05469 0.00000

🧭 Explore Read Mapping of CGC

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