Cluster: A15.bin_6_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_01109
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_555 | A15_contig_555_61 | 63311 | 64180 | - | CE4 |
| CAZyme | A15_contig_555 | A15_contig_555_62 | 64271 | 65389 | - | GH105 |
| TC | A15_contig_555 | A15_contig_555_63 | 65407 | 66711 | - | 2.A.56.1.5 |
| TC | A15_contig_555 | A15_contig_555_64 | 66712 | 67188 | - | 2.A.56.1.5 |
| TC | A15_contig_555 | A15_contig_555_65 | 67200 | 68222 | - | 2.A.56.1.5 |
Gene ID: A15_contig_555_61
Type: CAZyme
Location: 63311 - 64180 (-)
Type: CAZyme
Location: 63311 - 64180 (-)
Gene ID: A15_contig_555_62
Type: CAZyme
Location: 64271 - 65389 (-)
Type: CAZyme
Location: 64271 - 65389 (-)
Gene ID: A15_contig_555_63
Type: TC
Location: 65407 - 66711 (-)
Type: TC
Location: 65407 - 66711 (-)
Gene ID: A15_contig_555_64
Type: TC
Location: 66712 - 67188 (-)
Type: TC
Location: 66712 - 67188 (-)
Gene ID: A15_contig_555_65
Type: TC
Location: 67200 - 68222 (-)
Type: TC
Location: 67200 - 68222 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_555_63 | vegan > omnivore | 1.93855 | 0.00409 |
| A15_contig_555_64 | vegan > omnivore | 15.97061 | 0.00409 |
| A15_contig_555_65 | vegan > omnivore | 7.40093 | 0.00409 |
| A15_contig_555_65 | vegetarian > omnivore | 5.90972 | 0.00000 |