Cluster: A15.bin_6_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: A15.bin_6
- CGC Family ID: CGCFAM_01878
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A15_contig_635 | A15_contig_635_30 | 37521 | 39284 | + | 2.A.35.2.1 |
| pfam | A15_contig_635 | A15_contig_635_31 | 39415 | 40218 | + | S6PP | Hydrolase_3 |
| NULL(UNKNOWN) | A15_contig_635 | A15_contig_635_32 | 40924 | 45225 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A15_contig_635 | A15_contig_635_33 | 45499 | 47481 | + | CBM48 | GH13_9 |
| TC | A15_contig_635 | A15_contig_635_34 | 47529 | 48152 | - | 3.A.2.3.2 |
| TC | A15_contig_635 | A15_contig_635_35 | 48209 | 49600 | - | 3.A.2.3.3 |
| TC | A15_contig_635 | A15_contig_635_36 | 49616 | 51415 | - | 3.A.2.3.2 |
| pfam | A15_contig_635 | A15_contig_635_37 | 51375 | 51962 | - | vATP-synt_E |
| pfam | A15_contig_635 | A15_contig_635_38 | 51975 | 52283 | - | ATP-synt_F |
| TC | A15_contig_635 | A15_contig_635_39 | 52336 | 52770 | - | 3.A.2.2.1 |
| TC | A15_contig_635 | A15_contig_635_40 | 52798 | 54744 | - | 3.A.2.3.3 |
Gene ID: A15_contig_635_30
Type: TC
Location: 37521 - 39284 (+)
Type: TC
Location: 37521 - 39284 (+)
Gene ID: A15_contig_635_31
Type: pfam
Location: 39415 - 40218 (+)
Type: pfam
Location: 39415 - 40218 (+)
Gene ID: A15_contig_635_32
Type:
Location: 40924 - 45225 (+)
Type:
Location: 40924 - 45225 (+)
Gene ID: A15_contig_635_33
Type: CAZyme
Location: 45499 - 47481 (+)
Type: CAZyme
Location: 45499 - 47481 (+)
Gene ID: A15_contig_635_34
Type: TC
Location: 47529 - 48152 (-)
Type: TC
Location: 47529 - 48152 (-)
Gene ID: A15_contig_635_35
Type: TC
Location: 48209 - 49600 (-)
Type: TC
Location: 48209 - 49600 (-)
Gene ID: A15_contig_635_36
Type: TC
Location: 49616 - 51415 (-)
Type: TC
Location: 49616 - 51415 (-)
Gene ID: A15_contig_635_37
Type: pfam
Location: 51375 - 51962 (-)
Type: pfam
Location: 51375 - 51962 (-)
Gene ID: A15_contig_635_38
Type: pfam
Location: 51975 - 52283 (-)
Type: pfam
Location: 51975 - 52283 (-)
Gene ID: A15_contig_635_39
Type: TC
Location: 52336 - 52770 (-)
Type: TC
Location: 52336 - 52770 (-)
Gene ID: A15_contig_635_40
Type: TC
Location: 52798 - 54744 (-)
Type: TC
Location: 52798 - 54744 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_635_31 | vegan > omnivore | 2.23930 | 0.00409 |
| A15_contig_635_32 | vegan > omnivore | 1.39972 | 0.00409 |
| A15_contig_635_37 | vegan > omnivore | 3.34935 | 0.00409 |
| A15_contig_635_37 | vegetarian > omnivore | 3.07394 | 0.00000 |
| A15_contig_635_38 | vegan > omnivore | 2.20150 | 0.00409 |
| A15_contig_635_38 | vegetarian > omnivore | 1.38242 | 0.00000 |
| A15_contig_635_40 | vegan > omnivore | 1.37141 | 0.00409 |