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Cluster: A142.bin_5_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A142_contig_257 A142_contig_257_917 981495 983198 - GH13_18
NULL(UNKNOWN) A142_contig_257 A142_contig_257_918 983209 984165 - NULL(UNKNOWN)
[View Structural Homologs]
pfam A142_contig_257 A142_contig_257_919 984186 985028 - DUF34_NIF3
CAZyme A142_contig_257 A142_contig_257_920 985046 985825 - CE1
NULL(UNKNOWN) A142_contig_257 A142_contig_257_921 985863 986090 - NULL(UNKNOWN)
[View Structural Homologs]
TC A142_contig_257 A142_contig_257_922 986108 986998 - 3.A.1.1.29
TC A142_contig_257 A142_contig_257_923 987022 987969 - 3.A.1.1.10
pfam A142_contig_257 A142_contig_257_924 988151 989689 - DUF3502
TF A142_contig_257 A142_contig_257_925 990164 991162 - LacI
CAZyme A142_contig_257 A142_contig_257_926 991386 992570 - CE1
CAZyme A142_contig_257 A142_contig_257_927 992590 994305 - GH32
NULL(UNKNOWN) A142_contig_257 A142_contig_257_928 994917 995306 + NULL(UNKNOWN)
[View Structural Homologs]
pfam A142_contig_257 A142_contig_257_929 995424 996077 + YhhN
CAZyme A142_contig_257 A142_contig_257_930 996099 998657 + GH106
pfam A142_contig_257 A142_contig_257_931 998817 999665 - YhfC
NULL(UNKNOWN) A142_contig_257 A142_contig_257_932 999767 999970 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A142_contig_257 A142_contig_257_933 999970 1001127 - GH27
Gene ID: A142_contig_257_917
Type: CAZyme
Location: 981495 - 983198 (-)
Gene ID: A142_contig_257_918
Type:
Location: 983209 - 984165 (-)
Gene ID: A142_contig_257_919
Type: pfam
Location: 984186 - 985028 (-)
Gene ID: A142_contig_257_920
Type: CAZyme
Location: 985046 - 985825 (-)
Gene ID: A142_contig_257_921
Type:
Location: 985863 - 986090 (-)
Gene ID: A142_contig_257_922
Type: TC
Location: 986108 - 986998 (-)
Gene ID: A142_contig_257_923
Type: TC
Location: 987022 - 987969 (-)
Gene ID: A142_contig_257_924
Type: pfam
Location: 988151 - 989689 (-)
Gene ID: A142_contig_257_925
Type: TF
Location: 990164 - 991162 (-)
Gene ID: A142_contig_257_926
Type: CAZyme
Location: 991386 - 992570 (-)
Gene ID: A142_contig_257_927
Type: CAZyme
Location: 992590 - 994305 (-)
Gene ID: A142_contig_257_928
Type:
Location: 994917 - 995306 (+)
Gene ID: A142_contig_257_929
Type: pfam
Location: 995424 - 996077 (+)
Gene ID: A142_contig_257_930
Type: CAZyme
Location: 996099 - 998657 (+)
Gene ID: A142_contig_257_931
Type: pfam
Location: 998817 - 999665 (-)
Gene ID: A142_contig_257_932
Type:
Location: 999767 - 999970 (-)
Gene ID: A142_contig_257_933
Type: CAZyme
Location: 999970 - 1001127 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A142_contig_257_917 vegetarian > omnivore 1.06659 0.00845
A142_contig_257_917 vegetarian > vegan 1.31303 0.00029
A142_contig_257_919 vegetarian > vegan 1.62931 0.00029
A142_contig_257_920 vegetarian > vegan 3.14222 0.00029
A142_contig_257_921 vegetarian > vegan 3.44118 0.00029
A142_contig_257_923 vegetarian > vegan 1.98089 0.00029
A142_contig_257_927 vegetarian > omnivore 1.02802 0.00845
A142_contig_257_927 vegetarian > vegan 2.15244 0.00029
A142_contig_257_931 vegetarian > vegan 1.23416 0.00029
A142_contig_257_932 vegetarian > vegan 1.17023 0.00029
A142_contig_257_933 vegetarian > vegan 1.25301 0.00029

🧭 Explore Read Mapping of CGC

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