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Cluster: A130.bin_2_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A130_contig_1257 A130_contig_1257_2475 3108541 3110118 + GH23
TF A130_contig_1257 A130_contig_1257_2476 3110192 3110743 + GerE
STP A130_contig_1257 A130_contig_1257_2477 3110846 3112018 + FecR
TC A130_contig_1257 A130_contig_1257_2478 3112108 3115650 + 1.B.14.6.1
pfam A130_contig_1257 A130_contig_1257_2479 3115668 3117125 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) A130_contig_1257 A130_contig_1257_2480 3117148 3118275 + NULL(UNKNOWN)
[View Structural Homologs]
TC A130_contig_1257 A130_contig_1257_2481 3118410 3119330 + 3.A.1.132.9
TC A130_contig_1257 A130_contig_1257_2482 3119352 3121694 + 3.A.1.132.9
Gene ID: A130_contig_1257_2475
Type: CAZyme
Location: 3108541 - 3110118 (+)
Gene ID: A130_contig_1257_2476
Type: TF
Location: 3110192 - 3110743 (+)
Gene ID: A130_contig_1257_2477
Type: STP
Location: 3110846 - 3112018 (+)
Gene ID: A130_contig_1257_2478
Type: TC
Location: 3112108 - 3115650 (+)
Gene ID: A130_contig_1257_2479
Type: pfam
Location: 3115668 - 3117125 (+)
Gene ID: A130_contig_1257_2480
Type:
Location: 3117148 - 3118275 (+)
Gene ID: A130_contig_1257_2481
Type: TC
Location: 3118410 - 3119330 (+)
Gene ID: A130_contig_1257_2482
Type: TC
Location: 3119352 - 3121694 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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