Cluster: A130.bin_20_CGC27
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: A130.bin_20
- CGC Family ID: CGCFAM_04294
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2422 | 2496557 | 2497939 | + | 2.A.66.1.13 |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2423 | 2498046 | 2499413 | - | 2.A.66.1.33 |
| pfam | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2424 | 2499473 | 2500240 | - | Pan_kinase |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2425 | 2500244 | 2500915 | - | 2.A.87.2.3 |
| pfam | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2426 | 2500989 | 2502194 | - | Flavoprotein | DFP |
| CAZyme | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2427 | 2502292 | 2504535 | - | GH36 |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2428 | 2504618 | 2505439 | - | 3.A.1.1.11 |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2429 | 2505439 | 2506353 | - | 3.A.1.1.11 |
| STP | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2430 | 2506436 | 2507692 | - | SBP_bac_1 |
| CAZyme | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2431 | 2507708 | 2509441 | - | GH36 |
| TF | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2432 | 2509530 | 2510411 | + | HTH_AraC |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2433 | 2510594 | 2512606 | - | 3.A.1.134.4 |
| TC | A130_contig_315_corr_2_np12 | A130_contig_315_corr_2_np12_2434 | 2512599 | 2513366 | - | 3.A.1.134.4 |
Gene ID: A130_contig_315_corr_2_np12_2422
Type: TC
Location: 2496557 - 2497939 (+)
Type: TC
Location: 2496557 - 2497939 (+)
Gene ID: A130_contig_315_corr_2_np12_2423
Type: TC
Location: 2498046 - 2499413 (-)
Type: TC
Location: 2498046 - 2499413 (-)
Gene ID: A130_contig_315_corr_2_np12_2424
Type: pfam
Location: 2499473 - 2500240 (-)
Type: pfam
Location: 2499473 - 2500240 (-)
Gene ID: A130_contig_315_corr_2_np12_2425
Type: TC
Location: 2500244 - 2500915 (-)
Type: TC
Location: 2500244 - 2500915 (-)
Gene ID: A130_contig_315_corr_2_np12_2426
Type: pfam
Location: 2500989 - 2502194 (-)
Type: pfam
Location: 2500989 - 2502194 (-)
Gene ID: A130_contig_315_corr_2_np12_2427
Type: CAZyme
Location: 2502292 - 2504535 (-)
Type: CAZyme
Location: 2502292 - 2504535 (-)
Gene ID: A130_contig_315_corr_2_np12_2428
Type: TC
Location: 2504618 - 2505439 (-)
Type: TC
Location: 2504618 - 2505439 (-)
Gene ID: A130_contig_315_corr_2_np12_2429
Type: TC
Location: 2505439 - 2506353 (-)
Type: TC
Location: 2505439 - 2506353 (-)
Gene ID: A130_contig_315_corr_2_np12_2430
Type: STP
Location: 2506436 - 2507692 (-)
Type: STP
Location: 2506436 - 2507692 (-)
Gene ID: A130_contig_315_corr_2_np12_2431
Type: CAZyme
Location: 2507708 - 2509441 (-)
Type: CAZyme
Location: 2507708 - 2509441 (-)
Gene ID: A130_contig_315_corr_2_np12_2432
Type: TF
Location: 2509530 - 2510411 (+)
Type: TF
Location: 2509530 - 2510411 (+)
Gene ID: A130_contig_315_corr_2_np12_2433
Type: TC
Location: 2510594 - 2512606 (-)
Type: TC
Location: 2510594 - 2512606 (-)
Gene ID: A130_contig_315_corr_2_np12_2434
Type: TC
Location: 2512599 - 2513366 (-)
Type: TC
Location: 2512599 - 2513366 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Sellimonas
Species
Sellimonas intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.