Cluster: A125.bin_6_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: A125.bin_6
- CGC Family ID: CGCFAM_06584
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A125_contig_2776 | A125_contig_2776_468 | 515377 | 516849 | + | 9.A.40.2.2 |
| TC | A125_contig_2776 | A125_contig_2776_469 | 516855 | 517907 | + | 2.A.20.1.5 |
| pfam | A125_contig_2776 | A125_contig_2776_470 | 517920 | 518543 | + | PhoU_div |
| TF | A125_contig_2776 | A125_contig_2776_471 | 518701 | 519072 | + | GntR |
| TC | A125_contig_2776 | A125_contig_2776_472 | 519072 | 519818 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | A125_contig_2776 | A125_contig_2776_473 | 519820 | 520653 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A125_contig_2776 | A125_contig_2776_474 | 520670 | 522769 | - | GH13_11 |
| TC | A125_contig_2776 | A125_contig_2776_475 | 522984 | 524291 | + | 3.A.1.121.4 |
| pfam | A125_contig_2776 | A125_contig_2776_476 | 524302 | 526044 | - | NFACT-R_1 | NFACT_N | NFACT-R_2 |
| TF | A125_contig_2776 | A125_contig_2776_477 | 526034 | 527512 | - | HTH_1 |
| TC | A125_contig_2776 | A125_contig_2776_478 | 527825 | 529132 | + | 2.A.11.1.2 |
Gene ID: A125_contig_2776_468
Type: TC
Location: 515377 - 516849 (+)
Type: TC
Location: 515377 - 516849 (+)
Gene ID: A125_contig_2776_469
Type: TC
Location: 516855 - 517907 (+)
Type: TC
Location: 516855 - 517907 (+)
Gene ID: A125_contig_2776_470
Type: pfam
Location: 517920 - 518543 (+)
Type: pfam
Location: 517920 - 518543 (+)
Gene ID: A125_contig_2776_471
Type: TF
Location: 518701 - 519072 (+)
Type: TF
Location: 518701 - 519072 (+)
Gene ID: A125_contig_2776_472
Type: TC
Location: 519072 - 519818 (+)
Type: TC
Location: 519072 - 519818 (+)
Gene ID: A125_contig_2776_473
Type:
Location: 519820 - 520653 (+)
Type:
Location: 519820 - 520653 (+)
Gene ID: A125_contig_2776_474
Type: CAZyme
Location: 520670 - 522769 (-)
Type: CAZyme
Location: 520670 - 522769 (-)
Gene ID: A125_contig_2776_475
Type: TC
Location: 522984 - 524291 (+)
Type: TC
Location: 522984 - 524291 (+)
Gene ID: A125_contig_2776_476
Type: pfam
Location: 524302 - 526044 (-)
Type: pfam
Location: 524302 - 526044 (-)
Gene ID: A125_contig_2776_477
Type: TF
Location: 526034 - 527512 (-)
Type: TF
Location: 526034 - 527512 (-)
Gene ID: A125_contig_2776_478
Type: TC
Location: 527825 - 529132 (+)
Type: TC
Location: 527825 - 529132 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Alitiscatomonas
Species
Alitiscatomonas aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.