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Cluster: A125.bin_5_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A125_contig_987 A125_contig_987_125 148500 150140 - GH123
TC A125_contig_987 A125_contig_987_126 150232 151590 - 3.A.1.1.11
TC A125_contig_987 A125_contig_987_127 151604 152524 - 3.A.1.1.30
STP A125_contig_987 A125_contig_987_128 152789 154105 + SBP_bac_1
TC A125_contig_987 A125_contig_987_129 154244 156193 + 8.A.59.2.1
TF A125_contig_987 A125_contig_987_130 156190 157734 + HTH_AraC | HTH_AraC
TC A125_contig_987 A125_contig_987_131 157868 159037 - 2.A.4.7.4
pfam A125_contig_987 A125_contig_987_132 159227 159994 + NYN | OST-HTH
pfam A125_contig_987 A125_contig_987_133 160005 160748 - PseudoU_synth_1 | PseudoU_synth_1
TC A125_contig_987 A125_contig_987_134 160745 161548 - 3.A.1.25.4
TC A125_contig_987 A125_contig_987_135 161545 162429 - 3.A.1.26.7
TC A125_contig_987 A125_contig_987_136 162420 163265 - 3.A.1.26.7
Gene ID: A125_contig_987_125
Type: CAZyme
Location: 148500 - 150140 (-)
Gene ID: A125_contig_987_126
Type: TC
Location: 150232 - 151590 (-)
Gene ID: A125_contig_987_127
Type: TC
Location: 151604 - 152524 (-)
Gene ID: A125_contig_987_128
Type: STP
Location: 152789 - 154105 (+)
Gene ID: A125_contig_987_129
Type: TC
Location: 154244 - 156193 (+)
Gene ID: A125_contig_987_130
Type: TF
Location: 156190 - 157734 (+)
Gene ID: A125_contig_987_131
Type: TC
Location: 157868 - 159037 (-)
Gene ID: A125_contig_987_132
Type: pfam
Location: 159227 - 159994 (+)
Gene ID: A125_contig_987_133
Type: pfam
Location: 160005 - 160748 (-)
Gene ID: A125_contig_987_134
Type: TC
Location: 160745 - 161548 (-)
Gene ID: A125_contig_987_135
Type: TC
Location: 161545 - 162429 (-)
Gene ID: A125_contig_987_136
Type: TC
Location: 162420 - 163265 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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