Cluster: A112.bin_7_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_7
- CGC Family ID: CGCFAM_03009
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A112_contig_5092 | A112_contig_5092_235 | 256688 | 257443 | + | GH25 |
| pfam | A112_contig_5092 | A112_contig_5092_236 | 257483 | 258469 | + | PMI_typeI_cat | MPI_cupin_dom |
| pfam | A112_contig_5092 | A112_contig_5092_237 | 258522 | 259466 | + | ROK | BcrAD_BadFG |
| CAZyme | A112_contig_5092 | A112_contig_5092_238 | 259915 | 262179 | + | GH5_4 |
| TC | A112_contig_5092 | A112_contig_5092_239 | 262647 | 263378 | + | 3.A.2.1.5 |
| pfam | A112_contig_5092 | A112_contig_5092_240 | 263422 | 263637 | + | ATP-synt_C |
| TC | A112_contig_5092 | A112_contig_5092_241 | 263679 | 263885 | + | 3.A.2.1.5 |
| pfam | A112_contig_5092 | A112_contig_5092_242 | 264055 | 264546 | + | ATP-synt_B |
| pfam | A112_contig_5092 | A112_contig_5092_243 | 264543 | 265046 | + | OSCP |
| TC | A112_contig_5092 | A112_contig_5092_244 | 265056 | 266564 | + | 3.A.2.1.5 |
| TC | A112_contig_5092 | A112_contig_5092_245 | 266567 | 267463 | + | 3.A.2.1.5 |
| TC | A112_contig_5092 | A112_contig_5092_246 | 267533 | 268978 | + | 3.A.2.1.2 |
Gene ID: A112_contig_5092_235
Type: CAZyme
Location: 256688 - 257443 (+)
Type: CAZyme
Location: 256688 - 257443 (+)
Gene ID: A112_contig_5092_236
Type: pfam
Location: 257483 - 258469 (+)
Type: pfam
Location: 257483 - 258469 (+)
Gene ID: A112_contig_5092_237
Type: pfam
Location: 258522 - 259466 (+)
Type: pfam
Location: 258522 - 259466 (+)
Gene ID: A112_contig_5092_238
Type: CAZyme
Location: 259915 - 262179 (+)
Type: CAZyme
Location: 259915 - 262179 (+)
Gene ID: A112_contig_5092_239
Type: TC
Location: 262647 - 263378 (+)
Type: TC
Location: 262647 - 263378 (+)
Gene ID: A112_contig_5092_240
Type: pfam
Location: 263422 - 263637 (+)
Type: pfam
Location: 263422 - 263637 (+)
Gene ID: A112_contig_5092_241
Type: TC
Location: 263679 - 263885 (+)
Type: TC
Location: 263679 - 263885 (+)
Gene ID: A112_contig_5092_242
Type: pfam
Location: 264055 - 264546 (+)
Type: pfam
Location: 264055 - 264546 (+)
Gene ID: A112_contig_5092_243
Type: pfam
Location: 264543 - 265046 (+)
Type: pfam
Location: 264543 - 265046 (+)
Gene ID: A112_contig_5092_244
Type: TC
Location: 265056 - 266564 (+)
Type: TC
Location: 265056 - 266564 (+)
Gene ID: A112_contig_5092_245
Type: TC
Location: 266567 - 267463 (+)
Type: TC
Location: 266567 - 267463 (+)
Gene ID: A112_contig_5092_246
Type: TC
Location: 267533 - 268978 (+)
Type: TC
Location: 267533 - 268978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5092_235 | vegan > omnivore | 3.17595 | 0.00316 |
| A112_contig_5092_235 | vegetarian > omnivore | 3.07049 | 0.00207 |
| A112_contig_5092_240 | vegan > omnivore | 1.50323 | 0.00316 |
| A112_contig_5092_241 | vegan > omnivore | 1.33783 | 0.00316 |
| A112_contig_5092_243 | vegan > omnivore | 1.84049 | 0.00316 |
| A112_contig_5092_243 | vegetarian > omnivore | 1.77532 | 0.00207 |