Cluster: A112.bin_7_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_7
- CGC Family ID: CGCFAM_04264
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_5085 | A112_contig_5085_178 | 196799 | 199078 | - | 3.A.9.1.2 |
| NULL(UNKNOWN) | A112_contig_5085 | A112_contig_5085_179 | 199299 | 199421 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A112_contig_5085 | A112_contig_5085_180 | 199487 | 200923 | - | GntR |
| CAZyme | A112_contig_5085 | A112_contig_5085_181 | 200889 | 204002 | - | GH59 |
| pfam | A112_contig_5085 | A112_contig_5085_182 | 204005 | 204712 | - | Methyltransf_4 | Methyltransf_31 |
| pfam | A112_contig_5085 | A112_contig_5085_183 | 204935 | 205414 | - | dCMP_cyt_deam_1 | MafB19-deam |
| CAZyme | A112_contig_5085 | A112_contig_5085_184 | 205430 | 207289 | - | GH5_1 |
Gene ID: A112_contig_5085_178
Type: TC
Location: 196799 - 199078 (-)
Type: TC
Location: 196799 - 199078 (-)
Gene ID: A112_contig_5085_179
Type:
Location: 199299 - 199421 (+)
Type:
Location: 199299 - 199421 (+)
Gene ID: A112_contig_5085_180
Type: TF
Location: 199487 - 200923 (-)
Type: TF
Location: 199487 - 200923 (-)
Gene ID: A112_contig_5085_181
Type: CAZyme
Location: 200889 - 204002 (-)
Type: CAZyme
Location: 200889 - 204002 (-)
Gene ID: A112_contig_5085_182
Type: pfam
Location: 204005 - 204712 (-)
Type: pfam
Location: 204005 - 204712 (-)
Gene ID: A112_contig_5085_183
Type: pfam
Location: 204935 - 205414 (-)
Type: pfam
Location: 204935 - 205414 (-)
Gene ID: A112_contig_5085_184
Type: CAZyme
Location: 205430 - 207289 (-)
Type: CAZyme
Location: 205430 - 207289 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5085_182 | vegan > omnivore | 2.83546 | 0.00316 |
| A112_contig_5085_182 | vegetarian > omnivore | 2.91866 | 0.00207 |