Cluster: A112.bin_7_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.bin_7
- CGC Family ID: CGCFAM_02333
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_5853 | A112_contig_5853_104 | 130671 | 131930 | - | 9.A.40.2.4 |
| pfam | A112_contig_5853 | A112_contig_5853_105 | 132283 | 132864 | + | PTAC |
| CAZyme | A112_contig_5853 | A112_contig_5853_106 | 133064 | 135202 | + | CBM79 | CBM79 | GH5_4 |
| TC | A112_contig_5853 | A112_contig_5853_107 | 135392 | 136003 | + | 2.A.115.2.14 |
Gene ID: A112_contig_5853_104
Type: TC
Location: 130671 - 131930 (-)
Type: TC
Location: 130671 - 131930 (-)
Gene ID: A112_contig_5853_105
Type: pfam
Location: 132283 - 132864 (+)
Type: pfam
Location: 132283 - 132864 (+)
Gene ID: A112_contig_5853_106
Type: CAZyme
Location: 133064 - 135202 (+)
Type: CAZyme
Location: 133064 - 135202 (+)
Gene ID: A112_contig_5853_107
Type: TC
Location: 135392 - 136003 (+)
Type: TC
Location: 135392 - 136003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5853_104 | vegan > omnivore | 3.22665 | 0.00316 |
| A112_contig_5853_104 | vegetarian > omnivore | 2.78120 | 0.00207 |
| A112_contig_5853_105 | vegan > omnivore | 2.04713 | 0.00316 |
| A112_contig_5853_105 | vegetarian > omnivore | 1.95434 | 0.00207 |
| A112_contig_5853_107 | vegan > omnivore | 1.65658 | 0.00316 |
| A112_contig_5853_107 | vegetarian > omnivore | 1.64878 | 0.00207 |