Cluster: A112.bin_7_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_7
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_5085 | A112_contig_5085_21 | 25175 | 26641 | + | 2.A.66.1.32 |
| TC | A112_contig_5085 | A112_contig_5085_22 | 26914 | 28008 | + | 9.B.10.1.1 |
| pfam | A112_contig_5085 | A112_contig_5085_23 | 28035 | 29000 | + | cobW | DUF1980_C |
| pfam | A112_contig_5085 | A112_contig_5085_24 | 29377 | 30831 | + | HlyD_3 | Biotin_lipoyl_2 |
| TC | A112_contig_5085 | A112_contig_5085_25 | 30821 | 31522 | + | 3.A.1.122.2 |
| NULL(UNKNOWN) | A112_contig_5085 | A112_contig_5085_26 | 31519 | 33279 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_5085 | A112_contig_5085_27 | 33292 | 34572 | + | 3.A.1.122.2 |
| CAZyme | A112_contig_5085 | A112_contig_5085_28 | 34881 | 36344 | + | GT5 |
| NULL(UNKNOWN) | A112_contig_5085 | A112_contig_5085_29 | 37072 | 37818 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_5085 | A112_contig_5085_30 | 38878 | 40635 | - | 9.B.34.1.1 |
| pfam | A112_contig_5085 | A112_contig_5085_31 | 40770 | 41159 | + | MatE |
| CAZyme | A112_contig_5085 | A112_contig_5085_32 | 41344 | 42963 | + | GH5_1 |
Gene ID: A112_contig_5085_21
Type: TC
Location: 25175 - 26641 (+)
Type: TC
Location: 25175 - 26641 (+)
Gene ID: A112_contig_5085_22
Type: TC
Location: 26914 - 28008 (+)
Type: TC
Location: 26914 - 28008 (+)
Gene ID: A112_contig_5085_23
Type: pfam
Location: 28035 - 29000 (+)
Type: pfam
Location: 28035 - 29000 (+)
Gene ID: A112_contig_5085_24
Type: pfam
Location: 29377 - 30831 (+)
Type: pfam
Location: 29377 - 30831 (+)
Gene ID: A112_contig_5085_25
Type: TC
Location: 30821 - 31522 (+)
Type: TC
Location: 30821 - 31522 (+)
Gene ID: A112_contig_5085_26
Type:
Location: 31519 - 33279 (+)
Type:
Location: 31519 - 33279 (+)
Gene ID: A112_contig_5085_27
Type: TC
Location: 33292 - 34572 (+)
Type: TC
Location: 33292 - 34572 (+)
Gene ID: A112_contig_5085_28
Type: CAZyme
Location: 34881 - 36344 (+)
Type: CAZyme
Location: 34881 - 36344 (+)
Gene ID: A112_contig_5085_29
Type:
Location: 37072 - 37818 (+)
Type:
Location: 37072 - 37818 (+)
Gene ID: A112_contig_5085_30
Type: TC
Location: 38878 - 40635 (-)
Type: TC
Location: 38878 - 40635 (-)
Gene ID: A112_contig_5085_31
Type: pfam
Location: 40770 - 41159 (+)
Type: pfam
Location: 40770 - 41159 (+)
Gene ID: A112_contig_5085_32
Type: CAZyme
Location: 41344 - 42963 (+)
Type: CAZyme
Location: 41344 - 42963 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5085_23 | vegan > omnivore | 1.77798 | 0.00316 |
| A112_contig_5085_23 | vegetarian > omnivore | 1.49093 | 0.00207 |
| A112_contig_5085_25 | vegan > omnivore | 1.53258 | 0.00316 |
| A112_contig_5085_25 | vegetarian > omnivore | 1.84804 | 0.00207 |