Cluster: A112.bin_7_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_7
- CGC Family ID: CGCFAM_00317
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_7029 | A112_contig_7029_72 | 86939 | 87643 | - | 9.B.100.1.1 |
| NULL(UNKNOWN) | A112_contig_7029 | A112_contig_7029_73 | 88035 | 88451 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A112_contig_7029 | A112_contig_7029_74 | 88472 | 89419 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | A112_contig_7029 | A112_contig_7029_75 | 89416 | 90582 | - | GT4 |
| CAZyme | A112_contig_7029 | A112_contig_7029_76 | 90575 | 91726 | - | GT4 |
| pfam | A112_contig_7029 | A112_contig_7029_77 | 91849 | 92883 | - | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | A112_contig_7029 | A112_contig_7029_78 | 93020 | 94096 | - | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| TC | A112_contig_7029 | A112_contig_7029_79 | 94100 | 95692 | - | 9.B.18.1.3 |
Gene ID: A112_contig_7029_72
Type: TC
Location: 86939 - 87643 (-)
Type: TC
Location: 86939 - 87643 (-)
Gene ID: A112_contig_7029_73
Type:
Location: 88035 - 88451 (-)
Type:
Location: 88035 - 88451 (-)
Gene ID: A112_contig_7029_74
Type: pfam
Location: 88472 - 89419 (-)
Type: pfam
Location: 88472 - 89419 (-)
Gene ID: A112_contig_7029_75
Type: CAZyme
Location: 89416 - 90582 (-)
Type: CAZyme
Location: 89416 - 90582 (-)
Gene ID: A112_contig_7029_76
Type: CAZyme
Location: 90575 - 91726 (-)
Type: CAZyme
Location: 90575 - 91726 (-)
Gene ID: A112_contig_7029_77
Type: pfam
Location: 91849 - 92883 (-)
Type: pfam
Location: 91849 - 92883 (-)
Gene ID: A112_contig_7029_78
Type: pfam
Location: 93020 - 94096 (-)
Type: pfam
Location: 93020 - 94096 (-)
Gene ID: A112_contig_7029_79
Type: TC
Location: 94100 - 95692 (-)
Type: TC
Location: 94100 - 95692 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_7029_72 | vegan > omnivore | 1.24878 | 0.00316 |
| A112_contig_7029_72 | vegetarian > omnivore | 1.05571 | 0.00207 |
| A112_contig_7029_76 | vegetarian > omnivore | 1.09152 | 0.00207 |
| A112_contig_7029_78 | vegan > omnivore | 1.25684 | 0.00316 |
| A112_contig_7029_78 | vegetarian > omnivore | 1.31728 | 0.00207 |
| A112_contig_7029_79 | vegan > omnivore | 1.34371 | 0.00316 |
| A112_contig_7029_79 | vegetarian > omnivore | 1.71909 | 0.00207 |