Cluster: A112.bin_7_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.bin_7
- CGC Family ID: CGCFAM_00125
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_5092 | A112_contig_5092_563 | 615208 | 615882 | + | 9.B.31.1.2 |
| pfam | A112_contig_5092 | A112_contig_5092_564 | 615895 | 616893 | + | NAD_Gly3P_dh_N | ApbA | NAD_binding_2 | NAD_Gly3P_dh_C | GPD_NAD_C_bact |
| TF | A112_contig_5092 | A112_contig_5092_565 | 616937 | 617878 | + | HTH_1 |
| CAZyme | A112_contig_5092 | A112_contig_5092_566 | 618101 | 619180 | + | GT2 |
Gene ID: A112_contig_5092_563
Type: TC
Location: 615208 - 615882 (+)
Type: TC
Location: 615208 - 615882 (+)
Gene ID: A112_contig_5092_564
Type: pfam
Location: 615895 - 616893 (+)
Type: pfam
Location: 615895 - 616893 (+)
Gene ID: A112_contig_5092_565
Type: TF
Location: 616937 - 617878 (+)
Type: TF
Location: 616937 - 617878 (+)
Gene ID: A112_contig_5092_566
Type: CAZyme
Location: 618101 - 619180 (+)
Type: CAZyme
Location: 618101 - 619180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5092_563 | vegan > omnivore | 2.20825 | 0.00316 |
| A112_contig_5092_563 | vegetarian > omnivore | 2.51678 | 0.00207 |