Cluster: A112.bin_7_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.bin_7
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_5107 | A112_contig_5107_20 | 35424 | 36191 | - | 3.A.1.17.2 |
| TC | A112_contig_5107 | A112_contig_5107_21 | 36203 | 37000 | - | 3.A.1.16.3 |
| TF | A112_contig_5107 | A112_contig_5107_22 | 37371 | 38444 | + | LacI |
| CAZyme | A112_contig_5107 | A112_contig_5107_23 | 38559 | 40205 | + | CBM91 | GH43_11 |
Gene ID: A112_contig_5107_20
Type: TC
Location: 35424 - 36191 (-)
Type: TC
Location: 35424 - 36191 (-)
Gene ID: A112_contig_5107_21
Type: TC
Location: 36203 - 37000 (-)
Type: TC
Location: 36203 - 37000 (-)
Gene ID: A112_contig_5107_22
Type: TF
Location: 37371 - 38444 (+)
Type: TF
Location: 37371 - 38444 (+)
Gene ID: A112_contig_5107_23
Type: CAZyme
Location: 38559 - 40205 (+)
Type: CAZyme
Location: 38559 - 40205 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp900545285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_5107_20 | vegan > omnivore | 2.74792 | 0.00316 |
| A112_contig_5107_20 | vegetarian > omnivore | 2.10564 | 0.00207 |
| A112_contig_5107_21 | vegan > omnivore | 5.44120 | 0.00316 |
| A112_contig_5107_21 | vegetarian > omnivore | 5.43245 | 0.00207 |
| A112_contig_5107_22 | vegan > omnivore | 2.47162 | 0.00316 |
| A112_contig_5107_22 | vegetarian > omnivore | 1.69174 | 0.00207 |