Cluster: A112.bin_6_CGC48
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_6
- CGC Family ID: CGCFAM_06568
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A112_contig_327 | A112_contig_327_229 | 236330 | 237538 | - | GT4 |
| pfam | A112_contig_327 | A112_contig_327_230 | 237559 | 238068 | - | VTT_dom |
| CAZyme | A112_contig_327 | A112_contig_327_231 | 238306 | 241797 | + | GH2 |
| NULL(UNKNOWN) | A112_contig_327 | A112_contig_327_232 | 242054 | 242350 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_327 | A112_contig_327_233 | 242666 | 243172 | - | 3.A.1.26.5 |
Gene ID: A112_contig_327_229
Type: CAZyme
Location: 236330 - 237538 (-)
Type: CAZyme
Location: 236330 - 237538 (-)
Gene ID: A112_contig_327_230
Type: pfam
Location: 237559 - 238068 (-)
Type: pfam
Location: 237559 - 238068 (-)
Gene ID: A112_contig_327_231
Type: CAZyme
Location: 238306 - 241797 (+)
Type: CAZyme
Location: 238306 - 241797 (+)
Gene ID: A112_contig_327_232
Type:
Location: 242054 - 242350 (-)
Type:
Location: 242054 - 242350 (-)
Gene ID: A112_contig_327_233
Type: TC
Location: 242666 - 243172 (-)
Type: TC
Location: 242666 - 243172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_327_232 | vegetarian > vegan | 2.07397 | 0.00226 |