Cluster: A112.bin_6_CGC45
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_2717 | A112_contig_2717_275 | 315366 | 316835 | - | 1.B.52.2.2 |
| TC | A112_contig_2717 | A112_contig_2717_276 | 316868 | 317530 | - | 1.B.52.2.1 |
| STP | A112_contig_2717 | A112_contig_2717_277 | 317602 | 318693 | - | dCache_1 |
| TC | A112_contig_2717 | A112_contig_2717_278 | 318939 | 320819 | - | 3.A.3.6.10 |
| STP | A112_contig_2717 | A112_contig_2717_279 | 320845 | 321063 | - | HMA |
| CAZyme | A112_contig_2717 | A112_contig_2717_280 | 321374 | 323701 | + | GH2 |
| pfam | A112_contig_2717 | A112_contig_2717_281 | 323716 | 324657 | + | cobW | CobW_C |
| pfam | A112_contig_2717 | A112_contig_2717_282 | 324731 | 325141 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | A112_contig_2717 | A112_contig_2717_283 | 325166 | 326554 | - | 3.A.2.1.5 |
| TC | A112_contig_2717 | A112_contig_2717_284 | 326621 | 327484 | - | 3.A.2.1.5 |
| TC | A112_contig_2717 | A112_contig_2717_285 | 327511 | 329019 | - | 3.A.2.1.5 |
| TC | A112_contig_2717 | A112_contig_2717_286 | 329016 | 329582 | - | 3.A.2.1.2 |
| pfam | A112_contig_2717 | A112_contig_2717_287 | 329570 | 330085 | - | ATP-synt_B |
| TC | A112_contig_2717 | A112_contig_2717_288 | 330129 | 330383 | - | 3.A.2.1.5 |
| TC | A112_contig_2717 | A112_contig_2717_289 | 330423 | 331160 | - | 3.A.2.1.5 |
Gene ID: A112_contig_2717_275
Type: TC
Location: 315366 - 316835 (-)
Type: TC
Location: 315366 - 316835 (-)
Gene ID: A112_contig_2717_276
Type: TC
Location: 316868 - 317530 (-)
Type: TC
Location: 316868 - 317530 (-)
Gene ID: A112_contig_2717_277
Type: STP
Location: 317602 - 318693 (-)
Type: STP
Location: 317602 - 318693 (-)
Gene ID: A112_contig_2717_278
Type: TC
Location: 318939 - 320819 (-)
Type: TC
Location: 318939 - 320819 (-)
Gene ID: A112_contig_2717_279
Type: STP
Location: 320845 - 321063 (-)
Type: STP
Location: 320845 - 321063 (-)
Gene ID: A112_contig_2717_280
Type: CAZyme
Location: 321374 - 323701 (+)
Type: CAZyme
Location: 321374 - 323701 (+)
Gene ID: A112_contig_2717_281
Type: pfam
Location: 323716 - 324657 (+)
Type: pfam
Location: 323716 - 324657 (+)
Gene ID: A112_contig_2717_282
Type: pfam
Location: 324731 - 325141 (-)
Type: pfam
Location: 324731 - 325141 (-)
Gene ID: A112_contig_2717_283
Type: TC
Location: 325166 - 326554 (-)
Type: TC
Location: 325166 - 326554 (-)
Gene ID: A112_contig_2717_284
Type: TC
Location: 326621 - 327484 (-)
Type: TC
Location: 326621 - 327484 (-)
Gene ID: A112_contig_2717_285
Type: TC
Location: 327511 - 329019 (-)
Type: TC
Location: 327511 - 329019 (-)
Gene ID: A112_contig_2717_286
Type: TC
Location: 329016 - 329582 (-)
Type: TC
Location: 329016 - 329582 (-)
Gene ID: A112_contig_2717_287
Type: pfam
Location: 329570 - 330085 (-)
Type: pfam
Location: 329570 - 330085 (-)
Gene ID: A112_contig_2717_288
Type: TC
Location: 330129 - 330383 (-)
Type: TC
Location: 330129 - 330383 (-)
Gene ID: A112_contig_2717_289
Type: TC
Location: 330423 - 331160 (-)
Type: TC
Location: 330423 - 331160 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.