Cluster: A112.bin_6_CGC43
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_6
- CGC Family ID: CGCFAM_00498
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_2717 | A112_contig_2717_252 | 277979 | 278878 | - | 3.A.1.1.39 |
| TC | A112_contig_2717 | A112_contig_2717_253 | 278878 | 279837 | - | 3.A.1.1.11 |
| STP | A112_contig_2717 | A112_contig_2717_254 | 279854 | 282847 | - | SBP_bac_1 |
| pfam | A112_contig_2717 | A112_contig_2717_255 | 282834 | 283544 | - | DUF624 |
| CAZyme | A112_contig_2717 | A112_contig_2717_256 | 283544 | 285049 | - | CBM35 | GH26 |
| TF | A112_contig_2717 | A112_contig_2717_257 | 285433 | 286347 | + | HTH_AraC | HTH_AraC |
| CAZyme | A112_contig_2717 | A112_contig_2717_258 | 286351 | 287673 | - | CE17 |
Gene ID: A112_contig_2717_252
Type: TC
Location: 277979 - 278878 (-)
Type: TC
Location: 277979 - 278878 (-)
Gene ID: A112_contig_2717_253
Type: TC
Location: 278878 - 279837 (-)
Type: TC
Location: 278878 - 279837 (-)
Gene ID: A112_contig_2717_254
Type: STP
Location: 279854 - 282847 (-)
Type: STP
Location: 279854 - 282847 (-)
Gene ID: A112_contig_2717_255
Type: pfam
Location: 282834 - 283544 (-)
Type: pfam
Location: 282834 - 283544 (-)
Gene ID: A112_contig_2717_256
Type: CAZyme
Location: 283544 - 285049 (-)
Type: CAZyme
Location: 283544 - 285049 (-)
Gene ID: A112_contig_2717_257
Type: TF
Location: 285433 - 286347 (+)
Type: TF
Location: 285433 - 286347 (+)
Gene ID: A112_contig_2717_258
Type: CAZyme
Location: 286351 - 287673 (-)
Type: CAZyme
Location: 286351 - 287673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.