Cluster: A112.bin_6_CGC35
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: A112.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A112_contig_822 | A112_contig_822_260 | 254290 | 256422 | - | GH13_11 |
| pfam | A112_contig_822 | A112_contig_822_261 | 256406 | 257137 | - | Aldolase_II |
| CAZyme | A112_contig_822 | A112_contig_822_262 | 257267 | 258277 | + | CE8 |
| NULL(UNKNOWN) | A112_contig_822 | A112_contig_822_263 | 258334 | 258486 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_822 | A112_contig_822_264 | 258679 | 259734 | + | 3.A.1.24.2 |
| TC | A112_contig_822 | A112_contig_822_265 | 259721 | 260380 | + | 3.A.1.24.5 |
| TC | A112_contig_822 | A112_contig_822_266 | 260446 | 261366 | + | 3.A.1.24.5 |
| TF | A112_contig_822 | A112_contig_822_267 | 261467 | 262216 | - | HTH_3 |
| peptidase | A112_contig_822 | A112_contig_822_268 | 262347 | 263669 | - | M14.UPC |
| TC | A112_contig_822 | A112_contig_822_269 | 263734 | 264597 | - | 2.A.7.2.1 |
| peptidase | A112_contig_822 | A112_contig_822_270 | 264614 | 266782 | - | S09.UPC |
| CAZyme | A112_contig_822 | A112_contig_822_271 | 266865 | 270623 | - | GH51_2 |
Gene ID: A112_contig_822_260
Type: CAZyme
Location: 254290 - 256422 (-)
Type: CAZyme
Location: 254290 - 256422 (-)
Gene ID: A112_contig_822_261
Type: pfam
Location: 256406 - 257137 (-)
Type: pfam
Location: 256406 - 257137 (-)
Gene ID: A112_contig_822_262
Type: CAZyme
Location: 257267 - 258277 (+)
Type: CAZyme
Location: 257267 - 258277 (+)
Gene ID: A112_contig_822_263
Type:
Location: 258334 - 258486 (+)
Type:
Location: 258334 - 258486 (+)
Gene ID: A112_contig_822_264
Type: TC
Location: 258679 - 259734 (+)
Type: TC
Location: 258679 - 259734 (+)
Gene ID: A112_contig_822_265
Type: TC
Location: 259721 - 260380 (+)
Type: TC
Location: 259721 - 260380 (+)
Gene ID: A112_contig_822_266
Type: TC
Location: 260446 - 261366 (+)
Type: TC
Location: 260446 - 261366 (+)
Gene ID: A112_contig_822_267
Type: TF
Location: 261467 - 262216 (-)
Type: TF
Location: 261467 - 262216 (-)
Gene ID: A112_contig_822_268
Type: peptidase
Location: 262347 - 263669 (-)
Type: peptidase
Location: 262347 - 263669 (-)
Gene ID: A112_contig_822_269
Type: TC
Location: 263734 - 264597 (-)
Type: TC
Location: 263734 - 264597 (-)
Gene ID: A112_contig_822_270
Type: peptidase
Location: 264614 - 266782 (-)
Type: peptidase
Location: 264614 - 266782 (-)
Gene ID: A112_contig_822_271
Type: CAZyme
Location: 266865 - 270623 (-)
Type: CAZyme
Location: 266865 - 270623 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.