Cluster: A112.bin_6_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.bin_6
- CGC Family ID: CGCFAM_00385
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A112_contig_1332 | A112_contig_1332_106 | 116102 | 118882 | + | GH3 |
| TF | A112_contig_1332 | A112_contig_1332_107 | 119030 | 120079 | + | 0043758 |
| pfam | A112_contig_1332 | A112_contig_1332_108 | 120096 | 120737 | + | GrpE |
| TC | A112_contig_1332 | A112_contig_1332_109 | 120803 | 122680 | + | 1.A.33.1.4 |
Gene ID: A112_contig_1332_106
Type: CAZyme
Location: 116102 - 118882 (+)
Type: CAZyme
Location: 116102 - 118882 (+)
Gene ID: A112_contig_1332_107
Type: TF
Location: 119030 - 120079 (+)
Type: TF
Location: 119030 - 120079 (+)
Gene ID: A112_contig_1332_108
Type: pfam
Location: 120096 - 120737 (+)
Type: pfam
Location: 120096 - 120737 (+)
Gene ID: A112_contig_1332_109
Type: TC
Location: 120803 - 122680 (+)
Type: TC
Location: 120803 - 122680 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_1332_107 | vegetarian > omnivore | 1.32720 | 0.00454 |
| A112_contig_1332_107 | vegetarian > vegan | 1.15959 | 0.00226 |
| A112_contig_1332_108 | vegetarian > vegan | 1.51435 | 0.00226 |