Cluster: A112.bin_6_CGC13
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: A112.bin_6
- CGC Family ID: CGCFAM_00736
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A112_contig_1332 | A112_contig_1332_728 | 785518 | 787539 | - | GH42 |
| CAZyme | A112_contig_1332 | A112_contig_1332_729 | 787563 | 789308 | - | CBM34 | GH13_20 |
| CAZyme | A112_contig_1332 | A112_contig_1332_730 | 789444 | 791084 | - | CE20 |
| CAZyme | A112_contig_1332 | A112_contig_1332_731 | 791132 | 793321 | - | GH3 |
| CAZyme | A112_contig_1332 | A112_contig_1332_732 | 793397 | 795736 | - | GH31_3 |
| TF | A112_contig_1332 | A112_contig_1332_733 | 795930 | 797483 | + | HTH_AraC | HTH_AraC |
| pfam | A112_contig_1332 | A112_contig_1332_734 | 797582 | 798121 | - | Acetyltransf_1 |
| CAZyme | A112_contig_1332 | A112_contig_1332_735 | 798126 | 800468 | - | GH5_4 |
| TC | A112_contig_1332 | A112_contig_1332_736 | 800484 | 801131 | - | 9.B.28.1.2 |
| NULL(UNKNOWN) | A112_contig_1332 | A112_contig_1332_737 | 801202 | 802974 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_1332 | A112_contig_1332_738 | 803000 | 803968 | - | 3.A.1.1.29 |
| TC | A112_contig_1332 | A112_contig_1332_739 | 803980 | 805443 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | A112_contig_1332 | A112_contig_1332_740 | 805613 | 806938 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A112_contig_1332 | A112_contig_1332_741 | 807078 | 808889 | - | 8.A.59.2.1 |
| CAZyme | A112_contig_1332 | A112_contig_1332_742 | 808890 | 810374 | - | GH29 |
Gene ID: A112_contig_1332_728
Type: CAZyme
Location: 785518 - 787539 (-)
Type: CAZyme
Location: 785518 - 787539 (-)
Gene ID: A112_contig_1332_729
Type: CAZyme
Location: 787563 - 789308 (-)
Type: CAZyme
Location: 787563 - 789308 (-)
Gene ID: A112_contig_1332_730
Type: CAZyme
Location: 789444 - 791084 (-)
Type: CAZyme
Location: 789444 - 791084 (-)
Gene ID: A112_contig_1332_731
Type: CAZyme
Location: 791132 - 793321 (-)
Type: CAZyme
Location: 791132 - 793321 (-)
Gene ID: A112_contig_1332_732
Type: CAZyme
Location: 793397 - 795736 (-)
Type: CAZyme
Location: 793397 - 795736 (-)
Gene ID: A112_contig_1332_733
Type: TF
Location: 795930 - 797483 (+)
Type: TF
Location: 795930 - 797483 (+)
Gene ID: A112_contig_1332_734
Type: pfam
Location: 797582 - 798121 (-)
Type: pfam
Location: 797582 - 798121 (-)
Gene ID: A112_contig_1332_735
Type: CAZyme
Location: 798126 - 800468 (-)
Type: CAZyme
Location: 798126 - 800468 (-)
Gene ID: A112_contig_1332_736
Type: TC
Location: 800484 - 801131 (-)
Type: TC
Location: 800484 - 801131 (-)
Gene ID: A112_contig_1332_737
Type:
Location: 801202 - 802974 (-)
Type:
Location: 801202 - 802974 (-)
Gene ID: A112_contig_1332_738
Type: TC
Location: 803000 - 803968 (-)
Type: TC
Location: 803000 - 803968 (-)
Gene ID: A112_contig_1332_739
Type: TC
Location: 803980 - 805443 (-)
Type: TC
Location: 803980 - 805443 (-)
Gene ID: A112_contig_1332_740
Type:
Location: 805613 - 806938 (-)
Type:
Location: 805613 - 806938 (-)
Gene ID: A112_contig_1332_741
Type: TC
Location: 807078 - 808889 (-)
Type: TC
Location: 807078 - 808889 (-)
Gene ID: A112_contig_1332_742
Type: CAZyme
Location: 808890 - 810374 (-)
Type: CAZyme
Location: 808890 - 810374 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.