Cluster: A112.bin_6_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_6
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_1332 | A112_contig_1332_45 | 44108 | 45451 | + | 2.A.66.1.25 |
| pfam | A112_contig_1332 | A112_contig_1332_46 | 45476 | 46333 | + | BacA |
| pfam | A112_contig_1332 | A112_contig_1332_47 | 46347 | 46937 | + | TK |
| TC | A112_contig_1332 | A112_contig_1332_48 | 46934 | 48490 | + | 3.A.1.121.4 |
| pfam | A112_contig_1332 | A112_contig_1332_49 | 48511 | 49368 | + | Patatin | DUF6363 |
| TC | A112_contig_1332 | A112_contig_1332_50 | 49370 | 51340 | - | 3.A.1.106.8 |
| TC | A112_contig_1332 | A112_contig_1332_51 | 51341 | 53119 | - | 3.A.1.106.8 |
| STP | A112_contig_1332 | A112_contig_1332_52 | 53208 | 55301 | - | HATPase_c |
| NULL(UNKNOWN) | A112_contig_1332 | A112_contig_1332_53 | 55542 | 58304 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A112_contig_1332 | A112_contig_1332_54 | 58366 | 59187 | + | CE4 |
| pfam | A112_contig_1332 | A112_contig_1332_55 | 59272 | 60867 | + | Prismane |
| CAZyme | A112_contig_1332 | A112_contig_1332_56 | 60939 | 61892 | + | GT2 |
Gene ID: A112_contig_1332_45
Type: TC
Location: 44108 - 45451 (+)
Type: TC
Location: 44108 - 45451 (+)
Gene ID: A112_contig_1332_46
Type: pfam
Location: 45476 - 46333 (+)
Type: pfam
Location: 45476 - 46333 (+)
Gene ID: A112_contig_1332_47
Type: pfam
Location: 46347 - 46937 (+)
Type: pfam
Location: 46347 - 46937 (+)
Gene ID: A112_contig_1332_48
Type: TC
Location: 46934 - 48490 (+)
Type: TC
Location: 46934 - 48490 (+)
Gene ID: A112_contig_1332_49
Type: pfam
Location: 48511 - 49368 (+)
Type: pfam
Location: 48511 - 49368 (+)
Gene ID: A112_contig_1332_50
Type: TC
Location: 49370 - 51340 (-)
Type: TC
Location: 49370 - 51340 (-)
Gene ID: A112_contig_1332_51
Type: TC
Location: 51341 - 53119 (-)
Type: TC
Location: 51341 - 53119 (-)
Gene ID: A112_contig_1332_52
Type: STP
Location: 53208 - 55301 (-)
Type: STP
Location: 53208 - 55301 (-)
Gene ID: A112_contig_1332_53
Type:
Location: 55542 - 58304 (+)
Type:
Location: 55542 - 58304 (+)
Gene ID: A112_contig_1332_54
Type: CAZyme
Location: 58366 - 59187 (+)
Type: CAZyme
Location: 58366 - 59187 (+)
Gene ID: A112_contig_1332_55
Type: pfam
Location: 59272 - 60867 (+)
Type: pfam
Location: 59272 - 60867 (+)
Gene ID: A112_contig_1332_56
Type: CAZyme
Location: 60939 - 61892 (+)
Type: CAZyme
Location: 60939 - 61892 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900753715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.