Cluster: A112.bin_11_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.bin_11
- CGC Family ID: CGCFAM_00091
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_12607 | A112_contig_12607_29 | 24431 | 26191 | + | 3.A.1.135.5 |
| TC | A112_contig_12607 | A112_contig_12607_30 | 26181 | 28154 | + | 3.A.1.135.5 |
| NULL(UNKNOWN) | A112_contig_12607 | A112_contig_12607_31 | 28563 | 28658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A112_contig_12607 | A112_contig_12607_32 | 28949 | 30178 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | A112_contig_12607 | A112_contig_12607_33 | 30182 | 31327 | + | GT4 |
| CAZyme | A112_contig_12607 | A112_contig_12607_34 | 31269 | 32294 | + | GT2 |
Gene ID: A112_contig_12607_29
Type: TC
Location: 24431 - 26191 (+)
Type: TC
Location: 24431 - 26191 (+)
Gene ID: A112_contig_12607_30
Type: TC
Location: 26181 - 28154 (+)
Type: TC
Location: 26181 - 28154 (+)
Gene ID: A112_contig_12607_31
Type:
Location: 28563 - 28658 (+)
Type:
Location: 28563 - 28658 (+)
Gene ID: A112_contig_12607_32
Type: pfam
Location: 28949 - 30178 (+)
Type: pfam
Location: 28949 - 30178 (+)
Gene ID: A112_contig_12607_33
Type: CAZyme
Location: 30182 - 31327 (+)
Type: CAZyme
Location: 30182 - 31327 (+)
Gene ID: A112_contig_12607_34
Type: CAZyme
Location: 31269 - 32294 (+)
Type: CAZyme
Location: 31269 - 32294 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-448
Species
CAG-448 sp003150135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_12607_31 | vegan > omnivore | 1.52263 | 0.02517 |
| A112_contig_12607_32 | vegan > omnivore | 1.52226 | 0.02517 |
| A112_contig_12607_33 | vegan > omnivore | 1.24900 | 0.02517 |
| A112_contig_12607_34 | vegan > omnivore | 1.13763 | 0.02517 |